Variant report

Variant	rs73355365
Chromosome Location	chr6:13236958-13236959
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13235525..13237571-chr6:13272396..13274160,2	K562	blood:
2	chr6:13234560..13237159-chr6:13237392..13240503,3	K562	blood:

Variant related genes	Relation type
ENSG00000112137	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11970697	1.00[EUR][1000 genomes]
rs1398299	1.00[EUR][1000 genomes]
rs16873890	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16873911	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2000372	1.00[EUR][1000 genomes]
rs2000373	1.00[EUR][1000 genomes]
rs2000374	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34295856	1.00[EUR][1000 genomes]
rs559205	1.00[EUR][1000 genomes]
rs56796209	1.00[EUR][1000 genomes]
rs56850307	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs602976	0.87[AFR][1000 genomes]
rs61017997	1.00[EUR][1000 genomes]
rs61059365	1.00[EUR][1000 genomes]
rs6458615	1.00[EUR][1000 genomes]
rs6901091	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903869	1.00[EUR][1000 genomes]
rs6906831	1.00[EUR][1000 genomes]
rs6908840	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6909931	1.00[EUR][1000 genomes]
rs6910469	1.00[EUR][1000 genomes]
rs6910939	1.00[EUR][1000 genomes]
rs6911906	1.00[EUR][1000 genomes]
rs6913698	1.00[EUR][1000 genomes]
rs6922653	1.00[EUR][1000 genomes]
rs6923943	1.00[EUR][1000 genomes]
rs6927426	1.00[EUR][1000 genomes]
rs6936929	1.00[EUR][1000 genomes]
rs73357154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73357161	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73357163	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73357179	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73357182	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73368123	1.00[EUR][1000 genomes]
rs73368194	1.00[EUR][1000 genomes]
rs73725636	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73725637	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7749076	1.00[EUR][1000 genomes]
rs7767573	1.00[EUR][1000 genomes]
rs7769935	1.00[EUR][1000 genomes]
rs9463542	1.00[EUR][1000 genomes]
rs9473675	1.00[EUR][1000 genomes]
rs9473677	1.00[EUR][1000 genomes]
rs9473688	1.00[EUR][1000 genomes]
rs9473689	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432849	chr6:13225077-13253733	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	esv1815942	chr6:13235495-13250588	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1817130	chr6:13235495-13250588	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1830412	chr6:13235495-13250588	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1832850	chr6:13235495-13250588	Strong transcription Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1846185	chr6:13235495-13250588	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1848354	chr6:13235495-13250588	Bivalent Enhancer Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13208200-13239800	Weak transcription	Brain Substantia Nigra	brain
2	chr6:13217800-13242400	Weak transcription	Pancreas	Pancrea
3	chr6:13218400-13241000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:13227800-13238600	Strong transcription	Stomach Smooth Muscle	stomach
5	chr6:13227800-13240000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:13227800-13244000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:13228400-13237200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:13229200-13240000	Weak transcription	Fetal Lung	lung
9	chr6:13229400-13248200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:13230000-13239800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:13230200-13242400	Weak transcription	Fetal Intestine Small	intestine
12	chr6:13230600-13253400	Weak transcription	Spleen	Spleen
13	chr6:13230800-13248000	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:13231200-13248200	Weak transcription	Fetal Stomach	stomach
15	chr6:13232800-13239800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:13232800-13240000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:13232800-13240200	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:13232800-13243800	Weak transcription	Fetal Brain Female	brain
19	chr6:13233200-13239800	Weak transcription	Brain Angular Gyrus	brain
20	chr6:13233200-13256000	Weak transcription	Right Ventricle	heart
21	chr6:13234600-13238800	Weak transcription	Aorta	Aorta
22	chr6:13234600-13239800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:13234600-13267200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:13235200-13239800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:13235200-13248200	Weak transcription	HSMMtube	muscle
26	chr6:13235600-13237400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:13235600-13240000	Weak transcription	Lung	lung
28	chr6:13236000-13237600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr6:13236000-13238000	Weak transcription	Brain Anterior Caudate	brain
30	chr6:13236000-13248000	Weak transcription	Brain Germinal Matrix	brain
31	chr6:13236200-13239000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:13236200-13239400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:13236600-13237000	Strong transcription	Primary hematopoietic stem cells	blood
34	chr6:13236600-13237400	Enhancers	Fetal Heart	heart
35	chr6:13236800-13239200	Weak transcription	Left Ventricle	heart

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