Variant report

Variant	rs73360024
Chromosome Location	chr6:12772129-12772130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1332852	1.00[EUR][1000 genomes]
rs1332853	1.00[EUR][1000 genomes]
rs1537339	1.00[EUR][1000 genomes]
rs16873286	1.00[EUR][1000 genomes]
rs16873341	1.00[EUR][1000 genomes]
rs1889063	1.00[EUR][1000 genomes]
rs6942132	1.00[EUR][1000 genomes]
rs9283913	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830587	chr6:12769661-12939875	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12762200-12780600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:12769400-12773800	Enhancers	Fetal Brain Female	brain
3	chr6:12769600-12774000	Enhancers	Fetal Brain Male	brain
4	chr6:12770600-12775000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:12770600-12775800	Weak transcription	HSMMtube	muscle
6	chr6:12770800-12776200	Weak transcription	HSMM	muscle
7	chr6:12771200-12772200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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