Variant report

Variant	rs73363256
Chromosome Location	chr14:96791380-96791381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:96789748..96793342-chr14:96967409..96970462,3	K562	blood:

Variant related genes	Relation type
ENSG00000260806	Chromatin interaction
ENSG00000090060	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs28701482	1.00[AMR][1000 genomes]
rs55688559	1.00[AMR][1000 genomes]
rs56265756	1.00[AMR][1000 genomes]
rs56296574	1.00[AMR][1000 genomes]
rs59461473	1.00[AMR][1000 genomes]
rs60121386	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60248045	1.00[AMR][1000 genomes]
rs7146082	1.00[AMR][1000 genomes]
rs7146728	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73349211	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73349218	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363250	1.00[AMR][1000 genomes]
rs73363276	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363284	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363291	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73363299	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365110	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73365112	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086703	1.00[AMR][1000 genomes]
rs74086710	1.00[AMR][1000 genomes]
rs74086716	1.00[AMR][1000 genomes]
rs74090353	1.00[AMR][1000 genomes]
rs74090354	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043142	chr14:96096263-96978016	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv542177	chr14:96096263-96978016	Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv530800	chr14:96253695-96920094	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:96742000-96791600	Weak transcription	K562	blood
2	chr14:96747400-96797200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr14:96754200-96797200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr14:96756400-96811200	Weak transcription	Hela-S3	cervix
5	chr14:96757000-96812800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:96757000-96816000	Weak transcription	NHEK	skin
7	chr14:96764800-96792400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr14:96764800-96795400	Strong transcription	Adipose Nuclei	Adipose
9	chr14:96764800-96808200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr14:96765000-96792200	Strong transcription	Stomach Smooth Muscle	stomach
11	chr14:96765000-96799000	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr14:96765400-96804000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr14:96765600-96807600	Weak transcription	Fetal Heart	heart
14	chr14:96766600-96796000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr14:96766800-96795600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr14:96766800-96800600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr14:96767200-96793000	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr14:96767400-96801400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr14:96768000-96809200	Weak transcription	HMEC	breast
20	chr14:96770600-96815400	Weak transcription	Right Ventricle	heart
21	chr14:96771600-96807600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr14:96771800-96797200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr14:96774000-96806800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr14:96775000-96795000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr14:96775200-96792600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr14:96776400-96807600	Weak transcription	Gastric	stomach
27	chr14:96776400-96815800	Weak transcription	Spleen	Spleen
28	chr14:96777600-96797600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr14:96777600-96806800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr14:96777600-96806800	Weak transcription	HepG2	liver
31	chr14:96777600-96810000	Weak transcription	A549	lung
32	chr14:96777600-96814800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr14:96778000-96795800	Strong transcription	Liver	Liver
34	chr14:96779800-96806200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr14:96780800-96791600	Strong transcription	Fetal Muscle Trunk	muscle
36	chr14:96780800-96798800	Strong transcription	Primary T cells from cord blood	blood
37	chr14:96781400-96792200	Strong transcription	Primary hematopoietic stem cells	blood
38	chr14:96781400-96827800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr14:96782800-96796800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr14:96783200-96794800	Strong transcription	Left Ventricle	heart
41	chr14:96783400-96796200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr14:96783400-96797200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr14:96783400-96810000	Weak transcription	NHLF	lung
44	chr14:96783600-96791400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr14:96783800-96797200	Weak transcription	Psoas Muscle	Psoas
46	chr14:96783800-96827000	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr14:96784000-96802800	Weak transcription	HUVEC	blood vessel
48	chr14:96784800-96791400	Strong transcription	Thymus	Thymus
49	chr14:96785000-96792200	Strong transcription	Fetal Intestine Large	intestine
50	chr14:96785200-96792200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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