Variant report

Variant	rs73364138
Chromosome Location	chr6:12947016-12947017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs60433742	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364141	0.86[AFR][1000 genomes]
rs73364156	0.86[AFR][1000 genomes]
rs73364167	0.86[AFR][1000 genomes]
rs73364180	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364200	1.00[AMR][1000 genomes]
rs73366203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73366215	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73366226	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv5202	chr6:12916229-12958517	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12930400-12951800	Weak transcription	Fetal Brain Female	brain
2	chr6:12941600-12948600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:12942200-12948600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:12942400-12947600	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:12942600-12947400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:12943600-12951800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:12944600-12947400	Weak transcription	Adipose Nuclei	Adipose
8	chr6:12945000-12947400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:12945600-12950400	Weak transcription	Primary B cells from cord blood	blood
10	chr6:12945600-12954600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:12945600-12957000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr6:12945800-12947400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr6:12946800-12948400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:12947000-12948800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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