Variant report

Variant	rs73364156
Chromosome Location	chr6:12959116-12959117
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs60433742	1.00[AFR][1000 genomes]
rs73364138	0.86[AFR][1000 genomes]
rs73364141	1.00[AFR][1000 genomes]
rs73364167	1.00[AFR][1000 genomes]
rs73364180	1.00[AFR][1000 genomes]
rs73366203	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12956800-12959400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:12957000-12959200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:12957000-12959400	Active TSS	Brain Hippocampus Middle	brain
4	chr6:12957000-12960000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:12957200-12959200	Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr6:12957200-12959200	Active TSS	Right Atrium	heart
7	chr6:12957200-12959200	Active TSS	HSMM	muscle
8	chr6:12957200-12960200	Active TSS	Stomach Smooth Muscle	stomach
9	chr6:12957200-12961400	Active TSS	Aorta	Aorta
10	chr6:12957400-12959200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:12957400-12959200	Active TSS	Brain Angular Gyrus	brain
12	chr6:12957400-12959200	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr6:12957400-12959200	Active TSS	Brain Substantia Nigra	brain
14	chr6:12957400-12959200	Active TSS	Right Ventricle	heart
15	chr6:12957400-12959400	Active TSS	Left Ventricle	heart
16	chr6:12957400-12959400	Active TSS	Lung	lung
17	chr6:12957600-12959200	Active TSS	Fetal Heart	heart
18	chr6:12958000-12959200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:12958200-12959200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
20	chr6:12958200-12959800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:12958200-12962200	Weak transcription	Spleen	Spleen
22	chr6:12958200-12963000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:12958400-12959200	Flanking Active TSS	HUVEC	blood vessel
24	chr6:12958400-12962800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:12958600-12963200	Weak transcription	Primary B cells from cord blood	blood
26	chr6:12958800-12959200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
27	chr6:12958800-12959200	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr6:12958800-12959200	Flanking Active TSS	Brain Anterior Caudate	brain
29	chr6:12958800-12959200	Active TSS	Brain Germinal Matrix	brain
30	chr6:12958800-12959200	Enhancers	Psoas Muscle	Psoas
31	chr6:12958800-12962400	Weak transcription	Pancreas	Pancrea
32	chr6:12958800-12962800	Weak transcription	NHEK	skin
33	chr6:12958800-12963200	Weak transcription	NHLF	lung
34	chr6:12959000-12959200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
35	chr6:12959000-12959200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr6:12959000-12959200	Enhancers	Primary hematopoietic stem cells	blood
37	chr6:12959000-12959200	Enhancers	Adipose Nuclei	Adipose
38	chr6:12959000-12959200	Flanking Active TSS	Brain Cingulate Gyrus	brain
39	chr6:12959000-12959400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:12959000-12959600	Weak transcription	Fetal Kidney	kidney
41	chr6:12959000-12959800	Weak transcription	Colon Smooth Muscle	Colon
42	chr6:12959000-12962000	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr6:12959000-12962800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr6:12959000-12962800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:12959000-12963000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr6:12959000-12963000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:12959000-12963000	Weak transcription	Fetal Stomach	stomach
48	chr6:12959000-12963000	Weak transcription	HSMMtube	muscle
49	chr6:12959000-12963000	Weak transcription	NH-A	brain
50	chr6:12959000-12963000	Weak transcription	NHDF-Ad	bronchial

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