Variant report

Variant	rs73364180
Chromosome Location	chr6:12973361-12973362
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs60433742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364138	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364141	1.00[AFR][1000 genomes]
rs73364156	1.00[AFR][1000 genomes]
rs73364167	1.00[AFR][1000 genomes]
rs73364200	1.00[AMR][1000 genomes]
rs73366203	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73366215	1.00[AMR][1000 genomes]
rs73366226	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12963600-12974600	Weak transcription	Right Ventricle	heart
2	chr6:12964000-12988000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:12966800-12975600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:12968400-12976000	Weak transcription	Left Ventricle	heart
5	chr6:12968800-12973600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:12968800-12975000	Weak transcription	Brain Anterior Caudate	brain
7	chr6:12968800-12977400	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:12968800-12978200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:12969400-12973400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:12969400-12973400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:12969400-12973400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:12969400-12974200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:12971800-12979200	Enhancers	Fetal Heart	heart
14	chr6:12972000-12973600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:12972400-12974200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:12972800-12974400	Enhancers	Lung	lung
17	chr6:12973200-12973600	Weak transcription	Pancreas	Pancrea
18	chr6:12973200-12974000	Enhancers	Aorta	Aorta
19	chr6:12973200-12974200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:12973200-12974200	Enhancers	Ovary	ovary
21	chr6:12973200-12974200	Enhancers	HUVEC	blood vessel
22	chr6:12973200-12975200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr6:12973200-12978200	Weak transcription	Fetal Muscle Trunk	muscle

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