Variant report

Variant	rs73366203
Chromosome Location	chr6:12989091-12989092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs60433742	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364141	0.86[AFR][1000 genomes]
rs73364156	0.86[AFR][1000 genomes]
rs73364167	0.86[AFR][1000 genomes]
rs73364180	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364200	1.00[AMR][1000 genomes]
rs73366215	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73366226	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12976000-12990200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:12979600-13001800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:12982600-12990400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:12982600-13002400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:12987000-12990600	Weak transcription	Right Ventricle	heart
6	chr6:12988400-12990600	Weak transcription	Brain Angular Gyrus	brain
7	chr6:12988400-12991200	Weak transcription	Left Ventricle	heart
8	chr6:12988400-12992200	Weak transcription	Fetal Heart	heart
9	chr6:12988800-13006000	Weak transcription	Aorta	Aorta
10	chr6:12989000-12991800	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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