Variant report

Variant	rs73366226
Chromosome Location	chr6:13007060-13007061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13000472..13003227-chr6:13006605..13008195,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs60433742	1.00[AMR][1000 genomes]
rs73364138	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73364180	1.00[AMR][1000 genomes]
rs73364200	1.00[AMR][1000 genomes]
rs73366203	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73366215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12997400-13011000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:13004400-13010200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:13005200-13008200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:13005600-13007200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:13006200-13013200	Enhancers	Brain Anterior Caudate	brain
6	chr6:13006400-13007400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:13006400-13007400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:13006400-13007600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:13006400-13007800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:13006400-13008400	Weak transcription	Aorta	Aorta
11	chr6:13006400-13009400	Enhancers	Fetal Heart	heart
12	chr6:13006400-13010000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr6:13006600-13007400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:13006600-13007400	Enhancers	HSMM	muscle
15	chr6:13006800-13007200	Enhancers	Stomach Smooth Muscle	stomach
16	chr6:13006800-13007200	Enhancers	NHDF-Ad	bronchial
17	chr6:13006800-13007400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:13006800-13007800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:13006800-13007800	Enhancers	K562	blood
20	chr6:13007000-13007200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:13007000-13007200	Enhancers	Brain Angular Gyrus	brain
22	chr6:13007000-13007200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:13007000-13007200	Enhancers	Fetal Stomach	stomach
24	chr6:13007000-13007200	Enhancers	Left Ventricle	heart
25	chr6:13007000-13007400	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr6:13007000-13007400	Enhancers	HSMMtube	muscle
27	chr6:13007000-13007400	Enhancers	HUVEC	blood vessel
28	chr6:13007000-13009400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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