Variant report

Variant	rs73368165
Chromosome Location	chr6:13078911-13078912
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13076579..13079092-chr6:13614860..13616733,2	MCF-7	breast:
2	chr6:13073241..13075964-chr6:13078893..13081612,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225921	Chromatin interaction
ENSG00000261071	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11970697	1.00[ASN][1000 genomes]
rs58469352	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58613497	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6903869	1.00[ASN][1000 genomes]
rs6910939	1.00[ASN][1000 genomes]
rs73368123	1.00[ASN][1000 genomes]
rs73368142	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368147	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368149	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368163	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368168	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368172	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368175	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368177	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368182	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368194	1.00[ASN][1000 genomes]
rs73368196	1.00[ASN][1000 genomes]
rs73368197	1.00[ASN][1000 genomes]
rs73369823	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9473446	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13069800-13082200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:13072600-13082200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:13075000-13079400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:13075200-13082600	Enhancers	Brain Anterior Caudate	brain
5	chr6:13075400-13079600	Enhancers	Left Ventricle	heart
6	chr6:13075600-13079200	Enhancers	Right Ventricle	heart
7	chr6:13076800-13080400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:13076800-13082000	Weak transcription	Brain Angular Gyrus	brain
9	chr6:13077000-13079400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:13077000-13079400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:13077000-13080600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:13077000-13081600	Enhancers	Fetal Heart	heart
13	chr6:13077600-13081400	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:13077800-13079200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:13077800-13081000	Enhancers	Aorta	Aorta
16	chr6:13078400-13079000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:13078400-13079000	Enhancers	HSMMtube	muscle
18	chr6:13078400-13079200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr6:13078400-13079400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:13078400-13079600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr6:13078400-13079600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:13078400-13080000	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr6:13078600-13079200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr6:13078600-13079200	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr6:13078600-13079400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr6:13078600-13079600	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr6:13078600-13080800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:13078600-13101400	Weak transcription	Lung	lung
29	chr6:13078800-13079400	Weak transcription	Right Atrium	heart
30	chr6:13078800-13079600	Enhancers	H9 Cell Line	embryonic stem cell
31	chr6:13078800-13079600	Enhancers	HSMM	muscle

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