Variant report

Variant	rs73368172
Chromosome Location	chr6:13080184-13080185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11970697	1.00[ASN][1000 genomes]
rs58469352	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58613497	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6903869	1.00[ASN][1000 genomes]
rs6910939	1.00[ASN][1000 genomes]
rs73368123	1.00[ASN][1000 genomes]
rs73368142	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368147	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368149	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368163	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368165	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368168	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368175	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368177	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368182	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368194	1.00[ASN][1000 genomes]
rs73368196	1.00[ASN][1000 genomes]
rs73368197	1.00[ASN][1000 genomes]
rs73369823	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9473446	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13069800-13082200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:13072600-13082200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:13075200-13082600	Enhancers	Brain Anterior Caudate	brain
4	chr6:13076800-13080400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:13076800-13082000	Weak transcription	Brain Angular Gyrus	brain
6	chr6:13077000-13080600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:13077000-13081600	Enhancers	Fetal Heart	heart
8	chr6:13077600-13081400	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:13077800-13081000	Enhancers	Aorta	Aorta
10	chr6:13078600-13080800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:13078600-13101400	Weak transcription	Lung	lung
12	chr6:13079200-13081800	Weak transcription	Right Ventricle	heart
13	chr6:13079400-13080800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:13079600-13080200	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr6:13079600-13089400	Weak transcription	Left Ventricle	heart
16	chr6:13080000-13080400	Enhancers	Stomach Smooth Muscle	stomach
17	chr6:13080000-13081400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:13080000-13102000	Weak transcription	Fetal Brain Female	brain
19	chr6:13080000-13105200	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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