Variant report

Variant	rs73368197
Chromosome Location	chr6:13089723-13089724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13088282..13090116-chr6:13091669..13093301,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11970697	1.00[ASN][1000 genomes]
rs58469352	1.00[ASN][1000 genomes]
rs58613497	1.00[ASN][1000 genomes]
rs61067728	0.83[AMR][1000 genomes]
rs6903869	1.00[ASN][1000 genomes]
rs6910939	1.00[ASN][1000 genomes]
rs73368123	1.00[ASN][1000 genomes]
rs73368142	1.00[ASN][1000 genomes]
rs73368147	1.00[ASN][1000 genomes]
rs73368149	1.00[ASN][1000 genomes]
rs73368163	1.00[ASN][1000 genomes]
rs73368165	1.00[ASN][1000 genomes]
rs73368168	1.00[ASN][1000 genomes]
rs73368172	1.00[ASN][1000 genomes]
rs73368175	1.00[ASN][1000 genomes]
rs73368177	1.00[ASN][1000 genomes]
rs73368182	1.00[ASN][1000 genomes]
rs73368184	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73368194	1.00[ASN][1000 genomes]
rs73368196	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73369823	1.00[ASN][1000 genomes]
rs7740071	1.00[EUR][1000 genomes]
rs7774032	0.83[AMR][1000 genomes]
rs9473421	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9473429	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9473435	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9473446	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13078600-13101400	Weak transcription	Lung	lung
2	chr6:13080000-13102000	Weak transcription	Fetal Brain Female	brain
3	chr6:13080000-13105200	Weak transcription	Right Atrium	heart
4	chr6:13081800-13095200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:13082200-13097000	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:13082800-13095000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:13088600-13090200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:13088600-13090200	Enhancers	Brain Anterior Caudate	brain
9	chr6:13088600-13090400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:13089000-13090000	Enhancers	Primary hematopoietic stem cells	blood
11	chr6:13089000-13090200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:13089000-13090200	Enhancers	NHDF-Ad	bronchial
13	chr6:13089000-13091000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:13089000-13102000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:13089200-13090200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:13089200-13090200	Enhancers	HUVEC	blood vessel
17	chr6:13089400-13089800	Enhancers	Left Ventricle	heart
18	chr6:13089400-13089800	Enhancers	Right Ventricle	heart
19	chr6:13089400-13090000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr6:13089400-13090200	Enhancers	Brain Cingulate Gyrus	brain
21	chr6:13089600-13091400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr6:13089600-13094200	Weak transcription	Aorta	Aorta
23	chr6:13089600-13095000	Weak transcription	Fetal Heart	heart

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