Variant report

Variant	rs73369823
Chromosome Location	chr6:13103740-13103741
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11970697	1.00[ASN][1000 genomes]
rs58469352	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58613497	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6903869	1.00[ASN][1000 genomes]
rs6910939	1.00[ASN][1000 genomes]
rs73368123	1.00[ASN][1000 genomes]
rs73368142	1.00[ASN][1000 genomes]
rs73368147	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368149	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368163	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368165	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368168	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368172	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368175	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368177	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73368182	1.00[ASN][1000 genomes]
rs73368194	1.00[ASN][1000 genomes]
rs73368196	1.00[ASN][1000 genomes]
rs73368197	1.00[ASN][1000 genomes]
rs9473446	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13080000-13105200	Weak transcription	Right Atrium	heart
2	chr6:13097200-13106600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:13099200-13114200	Weak transcription	Aorta	Aorta
4	chr6:13099800-13105800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:13099800-13105800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:13099800-13105800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:13101800-13114200	Weak transcription	Lung	lung
8	chr6:13102200-13104000	Weak transcription	Left Ventricle	heart
9	chr6:13102200-13104200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:13102600-13107400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:13103000-13105400	Weak transcription	Right Ventricle	heart
12	chr6:13103200-13113800	Weak transcription	Pancreas	Pancrea
13	chr6:13103400-13105600	Weak transcription	Fetal Heart	heart
14	chr6:13103600-13105200	Weak transcription	Brain Anterior Caudate	brain
15	chr6:13103600-13114200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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