Variant report

Variant	rs73373260
Chromosome Location	chr7:39126912-39126913
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17171524	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17171541	0.83[AFR][1000 genomes]
rs17171542	0.83[AFR][1000 genomes]
rs73365515	0.83[AFR][1000 genomes]
rs73365534	0.83[AFR][1000 genomes]
rs73365575	0.83[AFR][1000 genomes]
rs73373246	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373258	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv887968	chr7:39123165-39198960	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39125400-39130200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:39125600-39127000	Enhancers	Fetal Brain Male	brain
3	chr7:39125600-39128400	Weak transcription	Aorta	Aorta
4	chr7:39125600-39128600	Active TSS	Fetal Brain Female	brain
5	chr7:39125600-39131600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:39125600-39131800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:39126000-39127000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:39126000-39127400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:39126000-39128600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:39126000-39129200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:39126400-39128400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:39126400-39128400	Weak transcription	Right Atrium	heart
13	chr7:39126600-39127000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:39126600-39131000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr7:39126800-39127200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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