Variant report

Variant	rs73376010
Chromosome Location	chr15:34635863-34635864
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZKSCAN1	chr15:34635069-34635917	Hela-S3	cervix:	n/a	n/a
2	MAX	chr15:34635017-34635966	H1-hESC	embryonic stem cell:	n/a	chr15:34635500-34635507 chr15:34635341-34635350 chr15:34635340-34635351 chr15:34635342-34635351 chr15:34635499-34635508 chr15:34635343-34635350
3	MAX	chr15:34634933-34635889	ECC-1	luminal epithelium:	n/a	chr15:34635500-34635507 chr15:34635341-34635350 chr15:34635340-34635351 chr15:34635342-34635351 chr15:34635499-34635508 chr15:34635343-34635350
4	MAX	chr15:34634954-34635888	A549	lung:	n/a	chr15:34635500-34635507 chr15:34635341-34635350 chr15:34635340-34635351 chr15:34635342-34635351 chr15:34635499-34635508 chr15:34635343-34635350
5	MYC	chr15:34635164-34635908	H1-hESC	embryonic stem cell:	n/a	chr15:34635500-34635507 chr15:34635341-34635350 chr15:34635340-34635351 chr15:34635342-34635351 chr15:34635499-34635508 chr15:34635343-34635350
6	SP1	chr15:34635086-34635886	H1-hESC	embryonic stem cell:	n/a	chr15:34635671-34635678
7	GABPA	chr15:34634915-34635926	MCF-7	breast:	n/a	n/a
8	CHD1	chr15:34635069-34635922	H1-hESC	embryonic stem cell:	n/a	n/a
9	CTCF	chr15:34635740-34635890	HPAF	blood vessel:	n/a	n/a
10	MYC	chr15:34635026-34635932	K562	blood:	n/a	chr15:34635500-34635507 chr15:34635341-34635350 chr15:34635340-34635351 chr15:34635342-34635351 chr15:34635499-34635508 chr15:34635343-34635350
11	MXI1	chr15:34634162-34636033	SK-N-SH	brain:	n/a	n/a
12	ATF3	chr15:34635025-34635934	A549	lung:	n/a	n/a
13	CTCF	chr15:34634923-34636091	A549	lung:	n/a	chr15:34635436-34635457 chr15:34635437-34635450 chr15:34635435-34635451 chr15:34635434-34635452 chr15:34635437-34635450
14	CBX3	chr15:34634997-34635976	HCT-116	colon:	n/a	chr15:34635954-34635965
15	TCF12	chr15:34634794-34635958	A549	lung:	n/a	n/a
16	SP1	chr15:34635100-34635885	H1-hESC	embryonic stem cell:	n/a	chr15:34635671-34635678
17	MAX	chr15:34634939-34635881	K562	blood:	n/a	chr15:34635500-34635507 chr15:34635341-34635350 chr15:34635340-34635351 chr15:34635342-34635351 chr15:34635499-34635508 chr15:34635343-34635350
18	SIX5	chr15:34634914-34636086	A549	lung:	n/a	chr15:34635399-34635413 chr15:34635172-34635186
19	CTCF	chr15:34634952-34636020	SK-N-SH	brain:	n/a	chr15:34635436-34635457 chr15:34635437-34635450 chr15:34635435-34635451 chr15:34635434-34635452 chr15:34635437-34635450
20	GABPA	chr15:34634777-34635898	A549	lung:	n/a	n/a
21	MXI1	chr15:34634846-34636207	IMR90	lung:	n/a	n/a
22	MAX	chr15:34635055-34635886	NB4	blood:	n/a	chr15:34635500-34635507 chr15:34635341-34635350 chr15:34635340-34635351 chr15:34635342-34635351 chr15:34635499-34635508 chr15:34635343-34635350
23	E2F6	chr15:34635040-34636099	H1-hESC	embryonic stem cell:	n/a	n/a
24	MAX	chr15:34635040-34635894	H1-hESC	embryonic stem cell:	n/a	chr15:34635500-34635507 chr15:34635341-34635350 chr15:34635340-34635351 chr15:34635342-34635351 chr15:34635499-34635508 chr15:34635343-34635350
25	CTCF	chr15:34634971-34635954	HCT-116	colon:	n/a	chr15:34635436-34635457 chr15:34635437-34635450 chr15:34635435-34635451 chr15:34635434-34635452 chr15:34635437-34635450
26	EP300	chr15:34635310-34635879	H1-hESC	embryonic stem cell:	n/a	chr15:34635373-34635380
27	POLR2A	chr15:34634763-34635873	H1-hESC	embryonic stem cell:	n/a	n/a
28	MAX	chr15:34635109-34635883	H1-hESC	embryonic stem cell:	n/a	chr15:34635500-34635507 chr15:34635341-34635350 chr15:34635340-34635351 chr15:34635342-34635351 chr15:34635499-34635508 chr15:34635343-34635350
29	CREB1	chr15:34635021-34635917	H1-hESC	embryonic stem cell:	n/a	n/a
30	E2F6	chr15:34635118-34635932	H1-hESC	embryonic stem cell:	n/a	n/a
31	JUND	chr15:34635059-34635954	H1-hESC	embryonic stem cell:	n/a	n/a
32	CBX3	chr15:34635059-34635958	K562	blood:	n/a	n/a
33	E2F4	chr15:34635036-34635951	MCF10A-Er-Src	breast:	n/a	n/a
34	MAX	chr15:34635012-34635911	HCT-116	colon:	n/a	chr15:34635500-34635507 chr15:34635341-34635350 chr15:34635340-34635351 chr15:34635342-34635351 chr15:34635499-34635508 chr15:34635343-34635350
35	MAX	chr15:34634943-34636018	A549	lung:	n/a	chr15:34635500-34635507 chr15:34635341-34635350 chr15:34635340-34635351 chr15:34635342-34635351 chr15:34635499-34635508 chr15:34635343-34635350
36	RAD21	chr15:34635032-34636001	SK-N-SH	brain:	n/a	chr15:34635436-34635450 chr15:34635435-34635454

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:34635847-34635897	CMK	blood:	n/a
2	chr15:34635847-34635897	AG04450	lung:	fetal
3	chr15:34635847-34635897	AG09319	gingival:	n/a
4	chr15:34635847-34635897	ovcar-3	ovarian:	n/a
5	chr15:34635847-34635897	HEEpiC	esophagus:	n/a
6	chr15:34635847-34635897	HUVEC	blood vessel:	n/a
7	chr15:34635847-34635897	NHBE	bronchial:	n/a
8	chr15:34635847-34635897	PrEC	prostate:	n/a
9	chr15:34635847-34635897	K562	blood:	n/a
10	chr15:34635847-34635897	ProgFib	skin:	n/a
11	chr15:34635847-34635897	HepG2	liver:	n/a
12	chr15:34635847-34635897	Hepatocyte	liver:	n/a
13	chr15:34635847-34635897	HRPEpiC	eye:	n/a
14	chr15:34635847-34635897	ECC-1	luminal epithelium:	n/a
15	chr15:34635847-34635897	Hela-S3	cervix:	n/a
16	chr15:34635847-34635897	NH-A	brain:	n/a
17	chr15:34635847-34635897	AG09309	skin:	n/a
18	chr15:34635847-34635897	U87	brain:	n/a
19	chr15:34635847-34635897	A549	lung:	n/a
20	chr15:34635847-34635897	HPAEpiC	pulmonary alveolar:	n/a
21	chr15:34635847-34635897	HL-60	blood:	n/a
22	chr15:34635847-34635897	NHDF-neo	bronchial:	n/a
23	chr15:34635847-34635897	HCM	heart:	n/a
24	chr15:34635847-34635897	H1-hESC	embryonic stem cell:	embryo
25	chr15:34635847-34635897	HCPEpiC	choroid plexus:	n/a
26	chr15:34635847-34635897	SK-N-MC	brain:	n/a
27	chr15:34635847-34635897	AG10803	skin:	n/a
28	chr15:34635847-34635897	GM12892	blood:	n/a
29	chr15:34635847-34635897	HNPCEpiC	eye:	n/a
30	chr15:34635847-34635897	PANC-1	pancreas:	n/a
31	chr15:34635847-34635897	SAEC	small airway:	n/a
32	chr15:34635847-34635897	BJ	skin:	n/a
33	chr15:34635847-34635897	HRCEpiC	kidney:	n/a
34	chr15:34635847-34635897	SK-N-SH_RA	brain:	n/a
35	chr15:34635847-34635897	SK-N-SH	brain:	n/a
36	chr15:34635847-34635897	GM12891	blood:	n/a
37	chr15:34635847-34635897	AoSMC	blood vessel:	n/a
38	chr15:34635847-34635897	MCF-7	breast:	n/a
39	chr15:34635847-34635897	LNCaP	prostate:	n/a
40	chr15:34635847-34635897	HMEC	breast:	n/a
41	chr15:34635847-34635897	IMR90	lung:	fetal
42	chr15:34635847-34635897	HRE	kidney:	n/a
43	chr15:34635847-34635897	NT2-D1	testis:	n/a
44	chr15:34635847-34635897	GM12878	blood:	n/a
45	chr15:34635847-34635897	Caco-2	colon:	n/a
46	chr15:34635847-34635897	T-47D	breast:	n/a
47	chr15:34635847-34635897	HAEpiC	amniotic membrane:	n/a
48	chr15:34635847-34635897	Jurkat	blood:	n/a
49	chr15:34635847-34635897	NB4	blood:	n/a
50	chr15:34635847-34635897	BE2_C	brain:	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:34634571..34635945-chr15:34658808..34660439,12	MCF-7	breast:
2	chr15:34632008..34636763-chr15:34655757..34660926,8	K562	blood:
3	chr15:34635280..34637526-chr15:34658001..34660457,2	K562	blood:
4	chr15:34635057..34636788-chr15:34655744..34657443,2	MCF-7	breast:
5	chr15:34628783..34632143-chr15:34633761..34637127,4	MCF-7	breast:
6	chr15:34632759..34637829-chr15:34654252..34657716,5	K562	blood:
7	chr15:34633865..34636798-chr15:34637017..34639359,2	K562	blood:
8	chr15:34633689..34636672-chr15:34659379..34661265,2	MCF-7	breast:
9	chr15:34633931..34636680-chr15:34728775..34730381,2	K562	blood:
10	chr15:34635005..34635906-chr15:34659046..34660693,6	K562	blood:

Variant related genes	Relation type
NOP10	TF binding region
NUTM1	TF binding region
NUTM1	CpG island
NOP10	CpG island
ENSG00000140199	Chromatin interaction
ENSG00000175265	Chromatin interaction
ENSG00000184507	Chromatin interaction
ENSG00000176454	Chromatin interaction

Extended variants
information (count: 128 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs104017	0.87[ASN][1000 genomes]
rs1045238	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11631094	0.82[ASN][1000 genomes]
rs12591967	0.80[ASN][1000 genomes]
rs12592913	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12593384	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12595504	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16958954	0.82[ASN][1000 genomes]
rs16958995	0.88[ASN][1000 genomes]
rs16959012	0.92[ASN][1000 genomes]
rs16959014	0.92[ASN][1000 genomes]
rs16959020	0.91[ASN][1000 genomes]
rs16959021	0.92[ASN][1000 genomes]
rs180886	0.92[ASN][1000 genomes]
rs1845773	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs186987	0.92[ASN][1000 genomes]
rs2219668	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2615357	0.94[ASN][1000 genomes]
rs2644245	0.85[ASN][1000 genomes]
rs28539755	0.89[ASN][1000 genomes]
rs3063	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34639726	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs347805	0.80[ASN][1000 genomes]
rs347827	0.85[ASN][1000 genomes]
rs347830	0.87[ASN][1000 genomes]
rs347831	0.92[ASN][1000 genomes]
rs347832	0.92[ASN][1000 genomes]
rs347833	0.92[ASN][1000 genomes]
rs347834	0.92[ASN][1000 genomes]
rs347836	0.87[ASN][1000 genomes]
rs347837	0.91[ASN][1000 genomes]
rs347838	0.91[ASN][1000 genomes]
rs347842	0.82[ASN][1000 genomes]
rs347843	0.82[ASN][1000 genomes]
rs347858	0.82[ASN][1000 genomes]
rs380248	0.89[ASN][1000 genomes]
rs422388	0.91[ASN][1000 genomes]
rs4569235	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs55745608	0.91[ASN][1000 genomes]
rs56057955	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs56762274	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57715165	0.85[ASN][1000 genomes]
rs57875866	0.82[ASN][1000 genomes]
rs58261770	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs58343025	0.92[ASN][1000 genomes]
rs58401365	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59375529	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs59452641	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs59861881	0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs60114685	0.81[ASN][1000 genomes]
rs60156693	0.92[ASN][1000 genomes]
rs60539207	0.81[ASN][1000 genomes]
rs61376537	0.82[ASN][1000 genomes]
rs6495660	0.87[ASN][1000 genomes]
rs6495661	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6495662	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7163195	0.92[ASN][1000 genomes]
rs7163919	0.81[ASN][1000 genomes]
rs7166066	0.92[ASN][1000 genomes]
rs7169857	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7170785	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7175028	0.89[ASN][1000 genomes]
rs7176009	0.89[ASN][1000 genomes]
rs7176426	0.89[ASN][1000 genomes]
rs7182584	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs72486679	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73374434	0.85[ASN][1000 genomes]
rs73374455	0.92[ASN][1000 genomes]
rs73374473	0.92[ASN][1000 genomes]
rs73374475	0.92[ASN][1000 genomes]
rs73374477	0.92[ASN][1000 genomes]
rs73374490	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73374491	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73374493	0.94[ASN][1000 genomes]
rs73374500	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs73374502	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73392004	0.81[ASN][1000 genomes]
rs756086	0.87[ASN][1000 genomes]
rs8023583	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs8025057	0.86[ASN][1000 genomes]
rs8031145	0.92[ASN][1000 genomes]
rs8031147	0.92[ASN][1000 genomes]
rs8031404	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8031958	0.92[ASN][1000 genomes]
rs8031961	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8032347	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8033032	0.87[ASN][1000 genomes]
rs8037379	0.92[ASN][1000 genomes]
rs8038177	0.87[ASN][1000 genomes]
rs8042163	0.92[ASN][1000 genomes]
rs8043005	0.85[ASN][1000 genomes]
rs924065	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9630418	0.92[ASN][1000 genomes]
rs9972305	0.92[ASN][1000 genomes]
rs9972323	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv1798578	chr15:34543021-34988247	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1804312	chr15:34543021-34988247	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	esv1821622	chr15:34543021-34988247	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	esv1850950	chr15:34543021-34988247	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	esv2758376	chr15:34543021-34988247	Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	esv2760024	chr15:34543021-34988247	Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	nsv428303	chr15:34543021-34988247	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
10	nsv1036475	chr15:34552879-34841587	Bivalent/Poised TSS Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv542342	chr15:34552879-34841587	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv1048550	chr15:34553078-34841447	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv542343	chr15:34553078-34841447	Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
14	nsv471682	chr15:34560451-34882630	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
15	nsv469547	chr15:34594557-34757807	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
16	nsv482528	chr15:34594557-34757807	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
17	esv1817014	chr15:34598601-34911177	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
18	esv1817924	chr15:34598601-34911177	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
19	esv1847172	chr15:34598601-34911177	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
20	esv1802396	chr15:34598601-34988247	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
21	esv1809360	chr15:34598601-34988247	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
22	esv1844776	chr15:34598601-34988247	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
23	nsv427957	chr15:34598601-34988247	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
24	nsv1039577	chr15:34624178-34962093	Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
25	nsv542344	chr15:34624178-34962093	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
26	nsv542345	chr15:34626815-34841586	Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
27	nsv542346	chr15:34627015-34841447	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
28	nsv915918	chr15:34627109-34841422	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
29	nsv916680	chr15:34627109-34964198	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
30	esv1822549	chr15:34628041-34909164	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
31	nsv1038524	chr15:34628041-34962093	Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
32	nsv542347	chr15:34628041-34962093	Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
33	nsv1042687	chr15:34635218-35000806	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs73376010	NOP10	cis	Heart Left Ventricle	GTEx
rs73376010	NOP10	cis	Thyroid	GTEx
rs73376010	NOP10	cis	Esophagus Muscularis	GTEx
rs73376010	NOP10	cis	Skin Sun Exposed Lower leg	GTEx
rs73376010	NOP10	cis	Esophagus Mucosa	GTEx
rs73376010	NOP10	cis	Muscle Skeletal	GTEx
rs73376010	NOP10	cis	Artery Tibial	GTEx

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34634200-34636000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr15:34634200-34636000	Active TSS	H9 Cell Line	embryonic stem cell
3	chr15:34634200-34636000	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr15:34634400-34636000	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr15:34634400-34636000	Active TSS	Fetal Brain Female	brain
6	chr15:34635000-34636000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr15:34635400-34636000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr15:34635400-34638000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:34635400-34638200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr15:34635400-34645600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:34635400-34645800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr15:34635400-34645800	Weak transcription	Esophagus	oesophagus
13	chr15:34635400-34645800	Weak transcription	Gastric	stomach
14	chr15:34635400-34645800	Weak transcription	Stomach Mucosa	stomach
15	chr15:34635400-34647400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:34635400-34647400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:34635400-34649000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr15:34635600-34636000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
19	chr15:34635600-34636000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr15:34635600-34640600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr15:34635600-34645400	Weak transcription	Fetal Intestine Small	intestine
22	chr15:34635600-34645600	Weak transcription	Primary T cells from cord blood	blood
23	chr15:34635600-34645800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr15:34635600-34646000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr15:34635600-34646600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr15:34635600-34647400	Weak transcription	Osteobl	bone
27	chr15:34635600-34647600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr15:34635600-34648600	Weak transcription	GM12878-XiMat	blood
29	chr15:34635600-34651200	Weak transcription	Pancreas	Pancrea
30	chr15:34635600-34657200	Weak transcription	Right Atrium	heart
31	chr15:34635800-34636000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
32	chr15:34635800-34636000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr15:34635800-34636000	Enhancers	Dnd41	blood
34	chr15:34635800-34637600	Weak transcription	K562	blood
35	chr15:34635800-34638000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr15:34635800-34640200	Weak transcription	Spleen	Spleen
37	chr15:34635800-34640600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr15:34635800-34645600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr15:34635800-34645600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr15:34635800-34645800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr15:34635800-34645800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr15:34635800-34645800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr15:34635800-34645800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr15:34635800-34645800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr15:34635800-34646400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr15:34635800-34646600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr15:34635800-34646600	Weak transcription	Stomach Smooth Muscle	stomach
48	chr15:34635800-34646800	Weak transcription	Rectal Smooth Muscle	rectum
49	chr15:34635800-34647000	Weak transcription	NHEK	skin
50	chr15:34635800-34647600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links