Variant report

Variant	rs73376196
Chromosome Location	chr15:34455554-34455555
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10775222	0.81[ASN][1000 genomes]
rs11636442	0.81[ASN][1000 genomes]
rs11852537	0.81[ASN][1000 genomes]
rs11857684	0.81[ASN][1000 genomes]
rs12594077	0.83[ASN][1000 genomes]
rs16958829	0.80[ASN][1000 genomes]
rs16958835	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16958836	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16958848	0.81[ASN][1000 genomes]
rs2339368	0.83[ASN][1000 genomes]
rs28375867	0.80[ASN][1000 genomes]
rs28418847	0.80[ASN][1000 genomes]
rs28538047	0.81[ASN][1000 genomes]
rs28813796	0.81[ASN][1000 genomes]
rs34187931	0.80[ASN][1000 genomes]
rs56936283	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57530092	0.82[ASN][1000 genomes]
rs57699120	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57715967	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57834992	0.80[ASN][1000 genomes]
rs59611916	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59635553	0.82[ASN][1000 genomes]
rs60749797	0.81[ASN][1000 genomes]
rs60905714	0.80[ASN][1000 genomes]
rs6495558	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495580	0.82[ASN][1000 genomes]
rs7166360	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7172480	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7172633	0.82[ASN][1000 genomes]
rs7173244	0.81[ASN][1000 genomes]
rs7173618	0.80[ASN][1000 genomes]
rs7174442	0.82[ASN][1000 genomes]
rs7174586	0.81[ASN][1000 genomes]
rs7175168	0.83[ASN][1000 genomes]
rs7178002	0.80[ASN][1000 genomes]
rs7178203	0.82[ASN][1000 genomes]
rs7180024	0.80[ASN][1000 genomes]
rs73376156	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73376164	0.83[ASN][1000 genomes]
rs73376168	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73376178	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73376181	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73376192	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73376193	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73378126	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73378128	0.82[ASN][1000 genomes]
rs73378138	0.82[ASN][1000 genomes]
rs73378144	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73380107	0.84[ASN][1000 genomes]
rs73380126	0.80[ASN][1000 genomes]
rs73380135	0.80[ASN][1000 genomes]
rs73380141	0.80[ASN][1000 genomes]
rs73380157	0.80[ASN][1000 genomes]
rs7497951	0.81[ASN][1000 genomes]
rs8025730	0.85[ASN][1000 genomes]
rs8028932	0.82[ASN][1000 genomes]
rs8028950	0.82[ASN][1000 genomes]
rs8031102	0.85[ASN][1000 genomes]
rs8035493	0.81[ASN][1000 genomes]
rs8036791	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8040732	0.85[ASN][1000 genomes]
rs8040861	0.81[ASN][1000 genomes]
rs9944206	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs73376196	NOP10	cis	Muscle Skeletal	GTEx
rs73376196	NOP10	cis	Esophagus Mucosa	GTEx
rs73376196	NOP10	cis	Heart Left Ventricle	GTEx
rs73376196	NOP10	cis	Esophagus Muscularis	GTEx

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34429800-34456800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr15:34443400-34456400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:34444400-34456400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr15:34445400-34459600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:34445800-34455600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:34445800-34459400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr15:34446200-34456000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:34451400-34456400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:34452000-34455600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:34452000-34457800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
11	chr15:34452200-34456000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr15:34452200-34456600	ZNF genes & repeats	A549	lung
13	chr15:34452600-34456200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
14	chr15:34452800-34455800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
15	chr15:34452800-34456600	ZNF genes & repeats	Dnd41	blood
16	chr15:34453000-34455600	ZNF genes & repeats	Fetal Intestine Small	intestine
17	chr15:34453000-34456400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
18	chr15:34453600-34456400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr15:34453600-34461000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr15:34453600-34474600	Weak transcription	Colon Smooth Muscle	Colon
21	chr15:34453800-34455600	Weak transcription	Fetal Brain Female	brain
22	chr15:34453800-34458400	Weak transcription	Psoas Muscle	Psoas
23	chr15:34454000-34455600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:34454000-34456000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr15:34454000-34457000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr15:34454000-34458200	Weak transcription	Right Ventricle	heart
27	chr15:34454000-34458400	Weak transcription	NH-A	brain
28	chr15:34454000-34477400	Weak transcription	HSMM	muscle
29	chr15:34454200-34455800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr15:34454200-34458000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr15:34454200-34497800	Weak transcription	Osteobl	bone
32	chr15:34454600-34455800	Weak transcription	NHDF-Ad	bronchial
33	chr15:34454600-34501200	Weak transcription	Colonic Mucosa	Colon
34	chr15:34454800-34465600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:34454800-34501000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr15:34455000-34455600	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr15:34455000-34456400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr15:34455000-34456800	Weak transcription	Adipose Nuclei	Adipose
39	chr15:34455000-34456800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr15:34455000-34457400	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr15:34455000-34458200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr15:34455000-34458200	Weak transcription	Esophagus	oesophagus
43	chr15:34455000-34458400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr15:34455000-34458400	Weak transcription	Liver	Liver
45	chr15:34455000-34458400	Weak transcription	Left Ventricle	heart
46	chr15:34455000-34458400	Weak transcription	HepG2	liver
47	chr15:34455000-34458800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:34455000-34459600	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr15:34455000-34460600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr15:34455000-34460800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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