Variant report

Variant	rs7338266
Chromosome Location	chr13:96442634-96442635
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96437224..96440401-chr13:96442107..96444722,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12583795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12583796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12855055	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2389530	0.81[CHB][hapmap]
rs3099357	0.81[CHB][hapmap]
rs3099359	0.81[CHB][hapmap]
rs35740456	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3901894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59576762	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6492820	0.90[CHB][hapmap]
rs6492821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7334552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7983756	0.86[CHB][hapmap]
rs7995306	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs9302084	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9561925	0.89[CEU][hapmap]
rs9561931	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9561935	0.89[CEU][hapmap]
rs9561936	0.89[CEU][hapmap]
rs9561939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9561953	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs9584326	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96405400-96452600	Weak transcription	Psoas Muscle	Psoas
2	chr13:96405600-96455800	Weak transcription	Fetal Heart	heart
3	chr13:96408400-96443600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr13:96408600-96443200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr13:96408600-96445400	Weak transcription	K562	blood
6	chr13:96412000-96443400	Weak transcription	Colonic Mucosa	Colon
7	chr13:96414000-96443400	Weak transcription	Brain Angular Gyrus	brain
8	chr13:96414400-96443400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr13:96416200-96443400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr13:96416200-96445400	Weak transcription	Fetal Kidney	kidney
11	chr13:96429600-96444200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr13:96430000-96457400	Weak transcription	Brain Germinal Matrix	brain
13	chr13:96432400-96443000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr13:96433000-96453000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr13:96434400-96443400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr13:96435000-96445800	Strong transcription	Primary B cells from cord blood	blood
17	chr13:96435000-96447800	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr13:96435600-96447200	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr13:96435800-96446800	Strong transcription	Primary T cells from cord blood	blood
20	chr13:96436000-96449000	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr13:96436200-96446600	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr13:96436200-96447000	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr13:96436200-96452200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr13:96436400-96443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr13:96436400-96444600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr13:96437000-96442800	Weak transcription	Colon Smooth Muscle	Colon
27	chr13:96437000-96443200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr13:96437000-96443400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr13:96437000-96451400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr13:96437200-96443200	Weak transcription	Gastric	stomach
31	chr13:96437200-96443400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr13:96437200-96443400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr13:96437200-96444600	Weak transcription	A549	lung
34	chr13:96437200-96445000	Weak transcription	Aorta	Aorta
35	chr13:96437200-96445200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr13:96437400-96443200	Weak transcription	Hela-S3	cervix
37	chr13:96437400-96445800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr13:96437400-96448800	Strong transcription	Liver	Liver
39	chr13:96437600-96443200	Weak transcription	Osteobl	bone
40	chr13:96437600-96443400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr13:96437600-96443400	Weak transcription	HUVEC	blood vessel
42	chr13:96437600-96447200	Weak transcription	Stomach Mucosa	stomach
43	chr13:96437800-96445800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr13:96438000-96445400	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr13:96438000-96445800	Strong transcription	Primary B cells from peripheral blood	blood
46	chr13:96438200-96450200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr13:96438400-96445800	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr13:96438400-96446800	Strong transcription	Duodenum Mucosa	Duodenum
49	chr13:96438600-96445600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr13:96438600-96445600	Strong transcription	Fetal Thymus	thymus

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