Variant report

Variant	rs73387078
Chromosome Location	chr6:27659192-27659193
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27658926..27663446-chr6:27685398..27690588,6	K562	blood:
2	chr6:27653789..27659338-chr6:27659392..27663401,13	K562	blood:
3	chr6:27657772..27659329-chr6:27759649..27761328,2	K562	blood:
4	chr6:27659151..27662876-chr6:27687364..27691190,4	K562	blood:
5	chr6:27652252..27653760-chr6:27657291..27659495,2	MCF-7	breast:
6	chr6:27517580..27520296-chr6:27658437..27660745,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs59543440	1.00[AFR][1000 genomes]
rs73383111	1.00[AMR][1000 genomes]
rs73383122	1.00[AMR][1000 genomes]
rs73383127	1.00[AMR][1000 genomes]
rs73385130	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386608	1.00[AMR][1000 genomes]
rs73386609	1.00[AMR][1000 genomes]
rs73386618	1.00[AFR][1000 genomes]
rs73386632	1.00[AMR][1000 genomes]
rs73386650	1.00[AFR][1000 genomes]
rs73387092	1.00[AMR][1000 genomes]
rs73397375	1.00[AMR][1000 genomes]
rs73399320	1.00[AMR][1000 genomes]
rs73401247	1.00[AMR][1000 genomes]
rs73401252	1.00[AMR][1000 genomes]
rs9688562	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv1023673	chr6:27570731-27688782	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
6	nsv883511	chr6:27623511-27660508	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv518945	chr6:27634640-27668013	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
8	nsv437481	chr6:27655096-27683572	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	nsv601204	chr6:27655564-27689502	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv1023808	chr6:27656049-27674354	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv601205	chr6:27656255-27730064	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27655800-27661400	Weak transcription	Lung	lung
2	chr6:27656200-27661000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:27656200-27661600	Weak transcription	Adipose Nuclei	Adipose
4	chr6:27656200-27661600	Weak transcription	Right Atrium	heart
5	chr6:27656400-27660200	Weak transcription	GM12878-XiMat	blood
6	chr6:27656400-27660800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:27656400-27661000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:27656400-27661200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:27656400-27661200	Weak transcription	HMEC	breast
10	chr6:27656400-27661400	Weak transcription	Pancreas	Pancrea
11	chr6:27656600-27661400	Weak transcription	Dnd41	blood
12	chr6:27657000-27661000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:27657200-27661000	Weak transcription	K562	blood
14	chr6:27657200-27661200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr6:27657400-27661000	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:27657600-27661000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:27658600-27661200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:27658800-27659200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:27658800-27661200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:27659000-27659400	Flanking Active TSS	HepG2	liver
21	chr6:27659000-27661400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:27659000-27661400	Weak transcription	NHEK	skin

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