Variant report
| Variant | rs73387865 |
|---|---|
| Chromosome Location | chr12:86853577-86853578 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11835193 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12302310 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12302551 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12303046 | 0.80[AMR][1000 genomes] |
| rs12319410 | 1.00[EUR][1000 genomes] |
| rs12319593 | 1.00[EUR][1000 genomes] |
| rs12581912 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17013981 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17014026 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17040806 | 0.83[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1986602 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2405929 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2405931 | 0.80[AMR][1000 genomes] |
| rs2897274 | 1.00[EUR][1000 genomes] |
| rs2897275 | 0.80[AMR][1000 genomes] |
| rs4526834 | 0.80[AMR][1000 genomes] |
| rs4636736 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs56170210 | 1.00[EUR][1000 genomes] |
| rs57002922 | 0.80[AMR][1000 genomes] |
| rs57977247 | 1.00[EUR][1000 genomes] |
| rs59690693 | 1.00[EUR][1000 genomes] |
| rs60555693 | 0.80[AMR][1000 genomes] |
| rs60902071 | 1.00[EUR][1000 genomes] |
| rs61014498 | 0.80[AMR][1000 genomes] |
| rs61359740 | 0.84[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7138352 | 1.00[EUR][1000 genomes] |
| rs7138786 | 1.00[EUR][1000 genomes] |
| rs73385292 | 1.00[EUR][1000 genomes] |
| rs73385293 | 1.00[EUR][1000 genomes] |
| rs7953491 | 1.00[EUR][1000 genomes] |
| rs7961251 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7977034 | 0.92[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754127 | chr12:86723232-87576932 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv899395 | chr12:86813367-87177972 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv916862 | chr12:86837694-87718558 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:86853000-86853800 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
| 2 | chr12:86853000-86854000 | Enhancers | HUES6 Cell Line | embryonic stem cell |
