Variant report
| Variant | rs73387891 |
|---|---|
| Chromosome Location | chr12:86873640-86873641 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:86873477..86875774-chr12:86880255..86882982,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs12099749 | 1.00[AMR][1000 genomes] |
| rs12099863 | 1.00[AMR][1000 genomes] |
| rs57438715 | 1.00[AMR][1000 genomes] |
| rs73385208 | 1.00[AMR][1000 genomes] |
| rs73387209 | 1.00[AMR][1000 genomes] |
| rs73387213 | 1.00[AMR][1000 genomes] |
| rs73387277 | 1.00[AMR][1000 genomes] |
| rs73387872 | 1.00[AMR][1000 genomes] |
| rs73387880 | 1.00[AMR][1000 genomes] |
| rs73387884 | 1.00[AMR][1000 genomes] |
| rs73394940 | 1.00[AMR][1000 genomes] |
| rs73394948 | 1.00[AMR][1000 genomes] |
| rs73394970 | 1.00[AMR][1000 genomes] |
| rs73398184 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754127 | chr12:86723232-87576932 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv899395 | chr12:86813367-87177972 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv916862 | chr12:86837694-87718558 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv899396 | chr12:86863041-87276957 | ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv899397 | chr12:86863041-87636831 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:86872400-86878200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
