Variant report

Variant	rs73387940
Chromosome Location	chr15:34293733-34293734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10519901	0.95[EUR][1000 genomes]
rs11857881	0.95[EUR][1000 genomes]
rs16954025	0.92[EUR][1000 genomes]
rs16958529	0.97[EUR][1000 genomes]
rs16958535	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1872807	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2568539	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28510508	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28562640	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3928443	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs532720	0.97[ASN][1000 genomes]
rs57074162	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58152986	0.94[EUR][1000 genomes]
rs61134341	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73387915	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026782	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8033305	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8033306	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9806373	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv903985	chr15:34279319-34370487	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34265200-34299600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:34265400-34294200	Weak transcription	Fetal Stomach	stomach
3	chr15:34265400-34311800	Weak transcription	Liver	Liver
4	chr15:34274400-34311000	Weak transcription	Primary B cells from cord blood	blood
5	chr15:34277800-34303200	Weak transcription	Gastric	stomach
6	chr15:34278200-34310000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:34278400-34299600	Weak transcription	HSMM	muscle
8	chr15:34280800-34296200	Weak transcription	Pancreas	Pancrea
9	chr15:34281000-34306800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:34283000-34294600	Weak transcription	Left Ventricle	heart
11	chr15:34283000-34306000	Weak transcription	Ovary	ovary
12	chr15:34284200-34296800	Weak transcription	Brain Angular Gyrus	brain
13	chr15:34289400-34303800	Weak transcription	Psoas Muscle	Psoas
14	chr15:34289800-34299200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr15:34291800-34295200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr15:34292000-34315000	Weak transcription	Aorta	Aorta
17	chr15:34292200-34295000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr15:34293400-34293800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:34293400-34294200	Enhancers	HMEC	breast
20	chr15:34293400-34294400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:34293400-34294400	Enhancers	NHEK	skin
22	chr15:34293400-34294800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr15:34293400-34295400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr15:34293600-34293800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:34293600-34294400	Enhancers	Osteobl	bone
26	chr15:34293600-34294600	Enhancers	HUVEC	blood vessel

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