Variant report

Variant	rs73389935
Chromosome Location	chr15:34348207-34348208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16958707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57041595	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61378050	1.00[AMR][1000 genomes]
rs73374324	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73374333	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73374372	1.00[AMR][1000 genomes]
rs73387957	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73389919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv903985	chr15:34279319-34370487	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34348000-34349000	Enhancers	HSMM	muscle
2	chr15:34348000-34349000	Enhancers	HUVEC	blood vessel
3	chr15:34348000-34349200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:34348000-34349200	Enhancers	HSMMtube	muscle
5	chr15:34348000-34349400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr15:34348000-34349600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:34348000-34350000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:34348000-34350000	Enhancers	Osteobl	bone
9	chr15:34348200-34348400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:34348200-34348600	Flanking Active TSS	NH-A	brain
11	chr15:34348200-34348800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr15:34348200-34349200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:34348200-34349200	Enhancers	Hela-S3	cervix
14	chr15:34348200-34349200	Enhancers	NHDF-Ad	bronchial
15	chr15:34348200-34349200	Enhancers	NHEK	skin
16	chr15:34348200-34349400	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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