Variant report

Variant	rs73393465
Chromosome Location	chr15:39706261-39706262
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39704919..39707647-chr20:52293554..52295684,2	MCF-7	breast:
2	chr15:39705799..39707909-chr15:39873297..39874835,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs58001045	1.00[AMR][1000 genomes]
rs58836677	1.00[AMR][1000 genomes]
rs59550930	1.00[AMR][1000 genomes]
rs59611156	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59752089	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60077096	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60658485	1.00[AMR][1000 genomes]
rs60729119	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60772140	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60780722	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61052847	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61140941	1.00[AMR][1000 genomes]
rs61294562	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61583976	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73393501	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73395320	1.00[AMR][1000 genomes]
rs73395324	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73395336	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73395338	1.00[AMR][1000 genomes]
rs73395340	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73397317	1.00[AMR][1000 genomes]
rs73397334	1.00[AMR][1000 genomes]
rs73397367	1.00[AMR][1000 genomes]
rs8028168	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1042824	chr15:39676039-39757222	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv542362	chr15:39676039-39757222	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1047032	chr15:39679896-39706685	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv1052908	chr15:39692049-39750193	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1044082	chr15:39693241-39750193	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1036091	chr15:39699841-39750193	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39700000-39707800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:39703200-39708000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr15:39703200-39708600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr15:39703400-39706600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr15:39703800-39706400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:39703800-39706800	Weak transcription	HepG2	liver
7	chr15:39704000-39706600	Enhancers	GM12878-XiMat	blood
8	chr15:39704200-39708400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr15:39704200-39718800	Weak transcription	Thymus	Thymus
10	chr15:39704600-39707200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:39705000-39707200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:39705400-39706800	Enhancers	NHDF-Ad	bronchial
13	chr15:39705400-39708600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr15:39705600-39708800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr15:39705800-39706400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:39705800-39706600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:39705800-39707000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:39706000-39707400	Enhancers	Primary hematopoietic stem cells	blood
19	chr15:39706200-39706600	Enhancers	Primary B cells from cord blood	blood
20	chr15:39706200-39712000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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