Variant report
| Variant | rs73400125 |
|---|---|
| Chromosome Location | chr12:87436073-87436074 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:147)
| rs_ID | r2[population] |
|---|---|
| rs10858556 | 1.00[ASN][1000 genomes] |
| rs11104222 | 1.00[ASN][1000 genomes] |
| rs11104241 | 1.00[ASN][1000 genomes] |
| rs11104353 | 1.00[ASN][1000 genomes] |
| rs11608450 | 1.00[ASN][1000 genomes] |
| rs11608474 | 1.00[ASN][1000 genomes] |
| rs11608923 | 0.92[ASN][1000 genomes] |
| rs11609545 | 1.00[ASN][1000 genomes] |
| rs11610202 | 1.00[ASN][1000 genomes] |
| rs11610240 | 1.00[ASN][1000 genomes] |
| rs11610610 | 1.00[ASN][1000 genomes] |
| rs11612996 | 1.00[ASN][1000 genomes] |
| rs11613608 | 1.00[ASN][1000 genomes] |
| rs11614902 | 1.00[ASN][1000 genomes] |
| rs11615328 | 1.00[ASN][1000 genomes] |
| rs12099694 | 1.00[ASN][1000 genomes] |
| rs12099773 | 1.00[ASN][1000 genomes] |
| rs12099774 | 1.00[ASN][1000 genomes] |
| rs12301215 | 1.00[ASN][1000 genomes] |
| rs12813003 | 0.92[ASN][1000 genomes] |
| rs17014297 | 1.00[AMR][1000 genomes] |
| rs17014343 | 1.00[ASN][1000 genomes] |
| rs17014345 | 1.00[ASN][1000 genomes] |
| rs17014347 | 0.84[ASN][1000 genomes] |
| rs17014350 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17014352 | 1.00[ASN][1000 genomes] |
| rs17014355 | 1.00[ASN][1000 genomes] |
| rs17014357 | 1.00[ASN][1000 genomes] |
| rs17014359 | 1.00[ASN][1000 genomes] |
| rs17014361 | 1.00[ASN][1000 genomes] |
| rs17014363 | 1.00[ASN][1000 genomes] |
| rs17014366 | 1.00[ASN][1000 genomes] |
| rs17014369 | 1.00[ASN][1000 genomes] |
| rs17014430 | 1.00[ASN][1000 genomes] |
| rs17040813 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28438801 | 1.00[ASN][1000 genomes] |
| rs34546765 | 0.92[ASN][1000 genomes] |
| rs35212803 | 0.92[ASN][1000 genomes] |
| rs35316438 | 0.92[ASN][1000 genomes] |
| rs35772317 | 1.00[ASN][1000 genomes] |
| rs55676823 | 1.00[ASN][1000 genomes] |
| rs55742281 | 1.00[ASN][1000 genomes] |
| rs55778807 | 1.00[ASN][1000 genomes] |
| rs56212508 | 1.00[ASN][1000 genomes] |
| rs58636507 | 0.91[ASN][1000 genomes] |
| rs59432611 | 1.00[ASN][1000 genomes] |
| rs59500185 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60530487 | 1.00[ASN][1000 genomes] |
| rs60718562 | 1.00[ASN][1000 genomes] |
| rs61619114 | 1.00[ASN][1000 genomes] |
| rs61951460 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs66473769 | 1.00[ASN][1000 genomes] |
| rs66489945 | 1.00[ASN][1000 genomes] |
| rs66507120 | 1.00[ASN][1000 genomes] |
| rs66520580 | 1.00[ASN][1000 genomes] |
| rs66543122 | 1.00[ASN][1000 genomes] |
| rs66569903 | 1.00[ASN][1000 genomes] |
| rs66574092 | 1.00[ASN][1000 genomes] |
| rs66589206 | 1.00[ASN][1000 genomes] |
| rs66606466 | 1.00[ASN][1000 genomes] |
| rs66624731 | 1.00[ASN][1000 genomes] |
| rs66629114 | 1.00[ASN][1000 genomes] |
| rs66680519 | 1.00[ASN][1000 genomes] |
| rs66721237 | 1.00[ASN][1000 genomes] |
| rs66739429 | 1.00[ASN][1000 genomes] |
| rs66761801 | 1.00[ASN][1000 genomes] |
| rs66796553 | 1.00[ASN][1000 genomes] |
| rs66824103 | 1.00[ASN][1000 genomes] |
| rs66881017 | 1.00[ASN][1000 genomes] |
| rs66920061 | 1.00[ASN][1000 genomes] |
| rs66935924 | 1.00[ASN][1000 genomes] |
| rs66952248 | 1.00[ASN][1000 genomes] |
| rs66983270 | 1.00[ASN][1000 genomes] |
| rs66995551 | 1.00[ASN][1000 genomes] |
| rs67126124 | 1.00[ASN][1000 genomes] |
| rs67136611 | 1.00[ASN][1000 genomes] |
| rs67152262 | 1.00[ASN][1000 genomes] |
| rs67224165 | 1.00[ASN][1000 genomes] |
| rs67261476 | 1.00[ASN][1000 genomes] |
| rs67311221 | 1.00[ASN][1000 genomes] |
| rs67347619 | 1.00[ASN][1000 genomes] |
| rs67399263 | 1.00[ASN][1000 genomes] |
| rs67407309 | 1.00[ASN][1000 genomes] |
| rs67434511 | 0.92[ASN][1000 genomes] |
| rs67448624 | 1.00[ASN][1000 genomes] |
| rs67535999 | 1.00[ASN][1000 genomes] |
| rs67562061 | 1.00[ASN][1000 genomes] |
| rs67580367 | 1.00[ASN][1000 genomes] |
| rs67639118 | 1.00[ASN][1000 genomes] |
| rs67642342 | 1.00[ASN][1000 genomes] |
| rs67654202 | 1.00[ASN][1000 genomes] |
| rs67687334 | 1.00[ASN][1000 genomes] |
| rs67691941 | 1.00[ASN][1000 genomes] |
| rs67735893 | 1.00[ASN][1000 genomes] |
| rs67748606 | 1.00[ASN][1000 genomes] |
| rs67751006 | 1.00[ASN][1000 genomes] |
| rs67755243 | 1.00[ASN][1000 genomes] |
| rs67768352 | 1.00[ASN][1000 genomes] |
| rs67823383 | 1.00[ASN][1000 genomes] |
| rs67825879 | 1.00[ASN][1000 genomes] |
| rs67840505 | 1.00[ASN][1000 genomes] |
| rs67980276 | 1.00[ASN][1000 genomes] |
| rs67982985 | 1.00[ASN][1000 genomes] |
| rs68008015 | 1.00[ASN][1000 genomes] |
| rs68009363 | 1.00[ASN][1000 genomes] |
| rs68030146 | 1.00[ASN][1000 genomes] |
| rs68133325 | 1.00[ASN][1000 genomes] |
| rs68145579 | 1.00[ASN][1000 genomes] |
| rs68166481 | 1.00[ASN][1000 genomes] |
| rs71078956 | 1.00[ASN][1000 genomes] |
| rs7305593 | 1.00[ASN][1000 genomes] |
| rs73175427 | 1.00[ASN][1000 genomes] |
| rs73175468 | 1.00[ASN][1000 genomes] |
| rs73175480 | 1.00[ASN][1000 genomes] |
| rs73175494 | 1.00[ASN][1000 genomes] |
| rs73179849 | 1.00[ASN][1000 genomes] |
| rs73179855 | 1.00[ASN][1000 genomes] |
| rs73179857 | 1.00[ASN][1000 genomes] |
| rs73181416 | 1.00[ASN][1000 genomes] |
| rs73181428 | 1.00[ASN][1000 genomes] |
| rs73181432 | 1.00[ASN][1000 genomes] |
| rs73181435 | 1.00[ASN][1000 genomes] |
| rs73181441 | 1.00[ASN][1000 genomes] |
| rs73192720 | 1.00[ASN][1000 genomes] |
| rs73192732 | 1.00[ASN][1000 genomes] |
| rs73192749 | 1.00[ASN][1000 genomes] |
| rs73192760 | 1.00[ASN][1000 genomes] |
| rs73393740 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73393778 | 1.00[AMR][1000 genomes] |
| rs73400158 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73408641 | 1.00[AMR][1000 genomes] |
| rs73408682 | 1.00[AMR][1000 genomes] |
| rs73410067 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73410102 | 1.00[AMR][1000 genomes] |
| rs73412009 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73412012 | 1.00[AMR][1000 genomes] |
| rs73412014 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73412072 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73412073 | 1.00[AMR][1000 genomes] |
| rs73412076 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73412087 | 1.00[AMR][1000 genomes] |
| rs73412095 | 1.00[AMR][1000 genomes] |
| rs73414089 | 1.00[AMR][1000 genomes] |
| rs73414095 | 1.00[AMR][1000 genomes] |
| rs73414099 | 1.00[AMR][1000 genomes] |
| rs73414185 | 1.00[AMR][1000 genomes] |
| rs73416003 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754127 | chr12:86723232-87576932 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv916862 | chr12:86837694-87718558 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv899397 | chr12:86863041-87636831 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv868879 | chr12:87207243-87578373 | Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv559693 | chr12:87216285-87447757 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv1052693 | chr12:87219949-87573582 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 7 | nsv899403 | chr12:87225050-87528020 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 8 | esv2753551 | chr12:87226774-87473947 | Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 9 | nsv899406 | chr12:87233995-87528020 | Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 10 | nsv899407 | chr12:87254691-87506910 | Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 11 | esv2752961 | chr12:87255339-87465826 | ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 12 | esv2754599 | chr12:87255339-87491053 | Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 13 | esv2755612 | chr12:87260646-87460465 | Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 14 | esv2755080 | chr12:87260646-87465826 | Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 15 | esv2754967 | chr12:87281456-87491053 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 16 | nsv519543 | chr12:87307329-87528020 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 17 | nsv899408 | chr12:87319908-87490752 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 18 | nsv899409 | chr12:87319908-87506910 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 19 | nsv899410 | chr12:87319908-87528020 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 20 | nsv899411 | chr12:87339195-87459912 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 21 | nsv899412 | chr12:87346094-87506910 | Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 22 | nsv1044248 | chr12:87357657-87444309 | Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 23 | nsv1052738 | chr12:87369654-87440463 | Weak transcription ZNF genes & repeats Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 24 | nsv899413 | chr12:87378980-87490752 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 25 | nsv899414 | chr12:87378980-87506910 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 26 | nsv559698 | chr12:87435308-87479405 | Enhancers ZNF genes & repeats Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:87435200-87436600 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
