Variant report

Variant	rs73400726
Chromosome Location	chr18:24502586-24502587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57287485	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398728	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400708	1.00[AMR][1000 genomes]
rs73400716	0.85[AMR][1000 genomes]
rs73400728	1.00[AMR][1000 genomes]
rs73400735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400784	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv909472	chr18:24479960-24614192	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24500000-24503800	Weak transcription	Gastric	stomach
2	chr18:24500000-24506600	Weak transcription	Brain Substantia Nigra	brain
3	chr18:24500200-24504800	Weak transcription	Ovary	ovary
4	chr18:24501000-24503200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
5	chr18:24501400-24502800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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