Variant report

Variant	rs73400820
Chromosome Location	chr12:116827809-116827810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:116826627..116830207-chr12:116841911..116847985,6	MCF-7	breast:
2	chr12:116825784..116832758-chr12:116857439..116867276,23	MCF-7	breast:
3	chr12:116709711..116721513-chr12:116822251..116832160,67	MCF-7	breast:
4	chr12:116826897..116832091-chr12:116928924..116934069,7	MCF-7	breast:
5	chr12:116827531..116830730-chr12:117032001..117035622,5	MCF-7	breast:
6	chr12:116827425..116829192-chr12:117035910..117039153,4	MCF-7	breast:
7	chr12:116434971..116437787-chr12:116827502..116830003,2	MCF-7	breast:
8	chr12:116672759..116674482-chr12:116827064..116830036,2	MCF-7	breast:
9	chr12:116819845..116825395-chr12:116825821..116829645,6	K562	blood:
10	chr12:116698876..116703336-chr12:116826350..116830288,6	MCF-7	breast:
11	chr12:116827495..116829814-chr12:117147036..117149780,2	MCF-7	breast:
12	chr12:116713501..116718047-chr12:116823678..116830939,13	MCF-7	breast:
13	chr12:116827133..116831140-chr12:116860978..116865806,7	MCF-7	breast:
14	chr12:116817983..116820938-chr12:116827343..116829551,2	MCF-7	breast:
15	chr12:116827600..116828904-chr12:116932749..116933782,59	MCF-7	breast:
16	chr12:116826932..116830556-chr12:116940700..116942758,4	MCF-7	breast:
17	chr12:116827555..116830462-chr12:117125918..117127767,2	MCF-7	breast:
18	chr12:116825538..116830160-chr12:116936567..116940281,6	MCF-7	breast:
19	chr12:116827340..116830993-chr12:116850085..116852933,3	MCF-7	breast:
20	chr12:116827307..116829698-chr12:116837285..116839716,3	MCF-7	breast:
21	chr12:116827509..116831346-chr12:116927217..116929854,4	MCF-7	breast:
22	chr12:116827390..116828908-chr12:116966931..116968696,2	MCF-7	breast:
23	chr12:116827236..116830738-chr12:116867857..116873341,7	MCF-7	breast:
24	chr12:116826294..116831312-chr12:116930135..116935656,18	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000258249	Chromatin interaction
ENSG00000123066	Chromatin interaction
ENSG00000264037	Chromatin interaction

rs_ID	r²[population]
rs17615178	0.88[ASN][1000 genomes]
rs73400874	0.88[ASN][1000 genomes]

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:116821000-116828600	Weak transcription	Gastric	stomach
2	chr12:116822600-116828000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:116824000-116828800	Enhancers	A549	lung
4	chr12:116825000-116828200	Weak transcription	Liver	Liver
5	chr12:116825400-116828600	Weak transcription	K562	blood
6	chr12:116826000-116828800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr12:116826200-116829000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr12:116826200-116830400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr12:116826400-116829000	Enhancers	Osteobl	bone
10	chr12:116826400-116830400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr12:116826800-116828400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr12:116826800-116828800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr12:116826800-116828800	Enhancers	NH-A	brain
14	chr12:116826800-116829400	Enhancers	HMEC	breast
15	chr12:116826800-116830200	Enhancers	NHLF	lung
16	chr12:116826800-116830400	Enhancers	NHDF-Ad	bronchial
17	chr12:116827000-116828000	Enhancers	Hela-S3	cervix
18	chr12:116827000-116828600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr12:116827000-116828600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr12:116827000-116829000	Enhancers	HSMMtube	muscle
21	chr12:116827000-116829200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr12:116827000-116829200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr12:116827000-116829400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr12:116827000-116830200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr12:116827200-116828000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr12:116827200-116828600	Enhancers	Fetal Brain Female	brain
27	chr12:116827200-116828600	Enhancers	HSMM	muscle
28	chr12:116827400-116828800	Enhancers	HUVEC	blood vessel
29	chr12:116827600-116828600	Weak transcription	Pancreas	Pancrea
30	chr12:116827600-116831200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr12:116827800-116828200	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr12:116827800-116828200	Weak transcription	Esophagus	oesophagus
33	chr12:116827800-116829000	Enhancers	NHEK	skin

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