Variant report

Variant	rs73405931
Chromosome Location	chr7:101642581-101642582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101587675..101589304-chr7:101641856..101645951,3	MCF-7	breast:
2	chr7:101641657..101644444-chr7:101647257..101650083,2	K562	blood:
3	chr7:101635855..101638805-chr7:101640285..101643011,2	K562	blood:
4	chr7:101642133..101644445-chr7:101650974..101653254,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73405919	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73405970	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408043	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv482846	chr7:101539981-101707666	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv888827	chr7:101562674-101650302	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv482521	chr7:101604002-101718950	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv831080	chr7:101629121-101718950	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv981839	chr7:101632578-101663728	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101578200-101671200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:101614400-101646400	Weak transcription	Fetal Brain Female	brain
3	chr7:101627000-101647400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:101627000-101671200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:101628000-101651600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr7:101629000-101651600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:101630000-101668000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:101630400-101643800	Weak transcription	Right Atrium	heart
9	chr7:101630400-101646600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:101630800-101652400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:101631000-101644000	Weak transcription	Esophagus	oesophagus
12	chr7:101633000-101646600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:101633200-101649000	Weak transcription	Lung	lung
14	chr7:101633400-101651400	Weak transcription	Gastric	stomach
15	chr7:101634400-101649800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr7:101634400-101651600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr7:101634600-101652000	Weak transcription	Primary T cells from cord blood	blood
18	chr7:101635000-101652000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr7:101635200-101643000	Strong transcription	Fetal Intestine Small	intestine
20	chr7:101635600-101643600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr7:101635800-101651400	Weak transcription	HepG2	liver
22	chr7:101637000-101643200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr7:101637600-101647400	Weak transcription	Fetal Stomach	stomach
24	chr7:101639000-101643800	Enhancers	Thymus	Thymus
25	chr7:101639800-101655800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:101640000-101643800	Weak transcription	GM12878-XiMat	blood
27	chr7:101640200-101651600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr7:101640200-101652000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:101641000-101643800	Genic enhancers	Fetal Thymus	thymus
30	chr7:101641000-101644600	Enhancers	Fetal Muscle Leg	muscle
31	chr7:101641000-101645200	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr7:101641200-101642800	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr7:101641200-101642800	Enhancers	Placenta Amnion	Placenta Amnion
34	chr7:101641200-101643200	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr7:101641200-101644000	Enhancers	Placenta	Placenta
36	chr7:101641400-101643200	Enhancers	Primary hematopoietic stem cells	blood
37	chr7:101641400-101644400	Enhancers	Left Ventricle	heart
38	chr7:101641400-101644400	Enhancers	Dnd41	blood
39	chr7:101641400-101644600	Enhancers	Fetal Heart	heart
40	chr7:101641600-101642800	Enhancers	Primary B cells from cord blood	blood
41	chr7:101641600-101643000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr7:101641600-101643000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr7:101641600-101643000	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr7:101641600-101643000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr7:101641600-101643000	Enhancers	Primary B cells from peripheral blood	blood
46	chr7:101641600-101643200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr7:101641600-101643200	Enhancers	Right Ventricle	heart
48	chr7:101641600-101672000	Weak transcription	K562	blood
49	chr7:101641800-101651800	Weak transcription	Fetal Intestine Large	intestine
50	chr7:101642000-101643000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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