Variant report

Variant	rs73407965
Chromosome Location	chr10:119097406-119097407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:119093147..119095876-chr10:119096852..119099544,3	MCF-7	breast:
2	chr10:119097071..119098975-chr10:119105436..119107758,2	K562	blood:
3	chr10:119093017..119095795-chr10:119096896..119099742,2	K562	blood:
4	chr10:119095928..119098353-chr10:119180711..119183510,2	K562	blood:
5	chr10:119094047..119095795-chr10:119096896..119099210,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs363298	0.82[AFR][1000 genomes]
rs59647416	0.82[AFR][1000 genomes]
rs60805559	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60932634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73391180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73391185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73393113	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73393131	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73394930	0.82[AFR][1000 genomes]
rs73394936	0.82[AFR][1000 genomes]
rs73394944	0.82[AFR][1000 genomes]
rs73407929	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1007152	chr10:119093939-119103178	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119041400-119101200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:119049800-119100600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:119049800-119101400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:119049800-119102400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:119050000-119101600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr10:119063800-119113200	Weak transcription	Fetal Thymus	thymus
7	chr10:119064600-119098000	Weak transcription	HMEC	breast
8	chr10:119066800-119111600	Weak transcription	Colonic Mucosa	Colon
9	chr10:119069400-119104400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:119071600-119099200	Weak transcription	NH-A	brain
11	chr10:119071600-119106000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr10:119071800-119099200	Weak transcription	Hela-S3	cervix
13	chr10:119072000-119111200	Weak transcription	Aorta	Aorta
14	chr10:119076200-119099800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:119076400-119104800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:119078000-119101400	Weak transcription	NHDF-Ad	bronchial
17	chr10:119078200-119104400	Weak transcription	HSMM	muscle
18	chr10:119079000-119101800	Weak transcription	NHEK	skin
19	chr10:119079400-119099200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:119082200-119099800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr10:119082400-119118600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:119082600-119102000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:119083400-119104600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:119083600-119098800	Weak transcription	Colon Smooth Muscle	Colon
25	chr10:119085600-119102000	Weak transcription	Pancreas	Pancrea
26	chr10:119086000-119102000	Weak transcription	Gastric	stomach
27	chr10:119086200-119099200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:119086400-119099000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:119086800-119098800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr10:119086800-119099200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr10:119087000-119097800	Weak transcription	Fetal Kidney	kidney
32	chr10:119087000-119100600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr10:119087600-119100000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr10:119088000-119101400	Weak transcription	Stomach Mucosa	stomach
35	chr10:119088600-119100000	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr10:119089800-119102000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:119092400-119099400	Weak transcription	Fetal Heart	heart
38	chr10:119093600-119101000	Strong transcription	Dnd41	blood
39	chr10:119093800-119098200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:119094000-119098800	Weak transcription	Fetal Intestine Small	intestine
41	chr10:119094000-119098800	Weak transcription	Left Ventricle	heart
42	chr10:119094000-119099200	Weak transcription	Small Intestine	intestine
43	chr10:119094000-119101400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr10:119094000-119102000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr10:119094000-119113200	Weak transcription	Thymus	Thymus
46	chr10:119094200-119101600	Weak transcription	Adipose Nuclei	Adipose
47	chr10:119094200-119102400	Weak transcription	Brain Angular Gyrus	brain
48	chr10:119094200-119108600	Weak transcription	Fetal Muscle Trunk	muscle
49	chr10:119094400-119105600	Weak transcription	Fetal Stomach	stomach
50	chr10:119094600-119097800	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links