Variant report

Variant	rs73408093
Chromosome Location	chr7:101781878-101781879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101779605..101781887-chr7:101783457..101786248,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10263474	0.82[AMR][1000 genomes]
rs104933	0.95[EUR][1000 genomes]
rs11972888	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11973970	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11977667	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11982785	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869529	0.82[AMR][1000 genomes]
rs17135027	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17135076	0.95[EUR][1000 genomes]
rs1734614	0.95[EUR][1000 genomes]
rs2051962	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2529097	0.95[EUR][1000 genomes]
rs34746794	0.95[EUR][1000 genomes]
rs364466	0.95[EUR][1000 genomes]
rs380967	0.98[EUR][1000 genomes]
rs388592	0.95[EUR][1000 genomes]
rs389224	0.95[EUR][1000 genomes]
rs392286	0.95[EUR][1000 genomes]
rs397479	0.95[EUR][1000 genomes]
rs411030	0.95[EUR][1000 genomes]
rs424941	0.95[EUR][1000 genomes]
rs436090	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs442030	0.95[EUR][1000 genomes]
rs446513	0.95[EUR][1000 genomes]
rs57673817	0.86[EUR][1000 genomes]
rs59476027	0.86[EUR][1000 genomes]
rs59822540	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6954742	0.86[EUR][1000 genomes]
rs6969463	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408028	0.82[AMR][1000 genomes]
rs73408058	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408094	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412026	0.86[EUR][1000 genomes]
rs73412034	0.86[EUR][1000 genomes]
rs73412036	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73412046	0.82[AMR][1000 genomes]
rs965863	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101755200-101787000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:101760200-101796000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:101760400-101788600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr7:101760400-101789400	Weak transcription	Right Ventricle	heart
5	chr7:101760400-101795800	Weak transcription	Left Ventricle	heart
6	chr7:101761000-101795600	Weak transcription	Colon Smooth Muscle	Colon
7	chr7:101763600-101790400	Weak transcription	Brain Anterior Caudate	brain
8	chr7:101765200-101788600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr7:101765200-101801200	Weak transcription	Pancreas	Pancrea
10	chr7:101765600-101783200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr7:101765600-101801000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr7:101765800-101783800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr7:101766000-101784600	Weak transcription	HUVEC	blood vessel
14	chr7:101766000-101796000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr7:101766000-101796000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr7:101766000-101796000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr7:101766200-101793800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:101766200-101796000	Weak transcription	Esophagus	oesophagus
19	chr7:101766200-101796600	Weak transcription	Brain Germinal Matrix	brain
20	chr7:101768000-101793800	Weak transcription	K562	blood
21	chr7:101768800-101784600	Weak transcription	Adipose Nuclei	Adipose
22	chr7:101768800-101790200	Weak transcription	Spleen	Spleen
23	chr7:101768800-101793800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr7:101768800-101795200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr7:101769000-101784000	Weak transcription	GM12878-XiMat	blood
26	chr7:101769000-101789600	Weak transcription	HSMM	muscle
27	chr7:101769000-101790000	Weak transcription	Ovary	ovary
28	chr7:101769000-101792400	Weak transcription	Gastric	stomach
29	chr7:101769000-101795000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr7:101769000-101795400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr7:101769000-101795800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr7:101769000-101795800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr7:101771200-101795400	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr7:101771400-101796600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr7:101771800-101784600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr7:101771800-101785400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr7:101772000-101784200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr7:101772000-101795200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr7:101772000-101796800	Weak transcription	Liver	Liver
40	chr7:101772000-101801600	Weak transcription	Duodenum Mucosa	Duodenum
41	chr7:101772600-101785000	Weak transcription	Fetal Intestine Large	intestine
42	chr7:101773400-101784400	Weak transcription	Fetal Muscle Leg	muscle
43	chr7:101773400-101795400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr7:101773600-101792800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr7:101773600-101795200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr7:101773600-101795800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr7:101773600-101801200	Weak transcription	Aorta	Aorta
48	chr7:101773800-101785600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr7:101773800-101796000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr7:101774200-101801200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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