Variant report

Variant	rs73409432
Chromosome Location	chr12:124503403-124503404
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:124456629..124458384-chr12:124502336..124503961,2	K562	blood:
2	chr12:124456629..124458465-chr12:124502336..124504117,3	K562	blood:

Variant related genes	Relation type
ENSG00000178882	Chromatin interaction
ENSG00000119242	Chromatin interaction
ENSG00000179195	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11833681	1.00[EUR][1000 genomes]
rs11835416	1.00[EUR][1000 genomes]
rs11836598	1.00[EUR][1000 genomes]
rs56025259	1.00[EUR][1000 genomes]
rs56096831	1.00[EUR][1000 genomes]
rs57024764	1.00[EUR][1000 genomes]
rs57861885	1.00[EUR][1000 genomes]
rs58292766	1.00[EUR][1000 genomes]
rs59689888	1.00[EUR][1000 genomes]
rs60509888	1.00[EUR][1000 genomes]
rs60571579	1.00[EUR][1000 genomes]
rs60654678	1.00[EUR][1000 genomes]
rs60890562	1.00[EUR][1000 genomes]
rs61174884	1.00[EUR][1000 genomes]
rs61231375	1.00[EUR][1000 genomes]
rs61730202	1.00[EUR][1000 genomes]
rs61735933	1.00[EUR][1000 genomes]
rs7135932	1.00[EUR][1000 genomes]
rs7296360	1.00[EUR][1000 genomes]
rs7956827	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899580	chr12:124499542-124565258	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124489200-124510400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:124493600-124505400	Weak transcription	Right Atrium	heart
3	chr12:124497400-124504600	Weak transcription	Small Intestine	intestine
4	chr12:124497400-124508800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr12:124497400-124509000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr12:124497800-124505400	Weak transcription	Ovary	ovary
7	chr12:124497800-124505400	Weak transcription	Pancreas	Pancrea
8	chr12:124497800-124506600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:124497800-124508400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr12:124497800-124508800	Weak transcription	HMEC	breast
11	chr12:124497800-124508800	Weak transcription	NHEK	skin
12	chr12:124497800-124511000	Weak transcription	Psoas Muscle	Psoas
13	chr12:124497800-124511200	Weak transcription	Fetal Brain Male	brain
14	chr12:124497800-124511400	Weak transcription	Gastric	stomach
15	chr12:124497800-124511600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr12:124498000-124508800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr12:124498000-124508800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr12:124498000-124509000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr12:124498000-124510800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr12:124498000-124511000	Weak transcription	HUVEC	blood vessel
21	chr12:124498200-124505200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr12:124498200-124508600	Weak transcription	HSMMtube	muscle
23	chr12:124498200-124510800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr12:124498400-124504000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr12:124498400-124505600	Weak transcription	Brain Angular Gyrus	brain
26	chr12:124498400-124505600	Weak transcription	Esophagus	oesophagus
27	chr12:124498400-124508200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr12:124498400-124508800	Weak transcription	Primary B cells from peripheral blood	blood
29	chr12:124498400-124508800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr12:124498400-124508800	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr12:124498400-124509600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr12:124498400-124511000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr12:124498400-124511000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr12:124498400-124511600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr12:124498400-124514600	Weak transcription	Spleen	Spleen
36	chr12:124498400-124517000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr12:124498600-124503600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr12:124498600-124508800	Weak transcription	Primary B cells from cord blood	blood
39	chr12:124498600-124508800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr12:124498600-124509000	Weak transcription	NH-A	brain
41	chr12:124498800-124511200	Weak transcription	Hela-S3	cervix
42	chr12:124499000-124505200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr12:124499000-124508800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr12:124499400-124505200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr12:124499400-124508600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr12:124499600-124505400	Weak transcription	Fetal Muscle Leg	muscle
47	chr12:124499600-124521400	Weak transcription	Brain Germinal Matrix	brain
48	chr12:124500200-124508200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr12:124500200-124508800	Weak transcription	HSMM	muscle
50	chr12:124500400-124503600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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