Variant report

Variant	rs7341019
Chromosome Location	chr5:59573549-59573550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10514891	0.83[YRI][hapmap]
rs12109374	0.81[YRI][hapmap]
rs4640751	0.92[AMR][1000 genomes]
rs4643905	0.92[AMR][1000 genomes]
rs58718949	0.92[AMR][1000 genomes]
rs60264107	0.92[AMR][1000 genomes]
rs6874388	0.84[YRI][hapmap];0.92[AMR][1000 genomes]
rs6879098	0.92[AMR][1000 genomes]
rs6879388	0.92[AMR][1000 genomes]
rs73104773	0.92[AMR][1000 genomes]
rs73106737	0.92[AMR][1000 genomes]
rs73106738	0.92[AMR][1000 genomes]
rs73106748	0.92[AMR][1000 genomes]
rs73106750	0.92[AMR][1000 genomes]
rs7703345	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59559600-59584800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:59561600-59576600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:59567400-59581600	Weak transcription	Fetal Brain Male	brain
4	chr5:59568400-59574800	Weak transcription	Aorta	Aorta
5	chr5:59573000-59574200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr5:59573200-59574000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr5:59573200-59574000	Enhancers	A549	lung
8	chr5:59573200-59574400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:59573200-59574600	Enhancers	HepG2	liver
10	chr5:59573400-59573800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr5:59573400-59574400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr5:59573400-59574600	Enhancers	Hela-S3	cervix
13	chr5:59573400-59574800	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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