Variant report

Variant	rs73410286
Chromosome Location	chr9:15584922-15584923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12685082	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs276452	0.80[ASN][1000 genomes]
rs34816651	0.86[AFR][1000 genomes]
rs60572069	0.84[AFR][1000 genomes]
rs6474950	0.87[AFR][1000 genomes]
rs7021778	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7035048	0.82[AFR][1000 genomes]
rs73410238	0.80[AFR][1000 genomes]
rs73410242	0.80[AFR][1000 genomes]
rs73410253	0.97[AFR][1000 genomes]
rs73410254	0.97[AFR][1000 genomes]
rs73416209	0.87[AFR][1000 genomes]
rs73416233	0.86[AFR][1000 genomes]
rs73416254	0.82[AFR][1000 genomes]
rs73416267	0.84[AFR][1000 genomes]
rs73416285	0.82[AFR][1000 genomes]
rs7846818	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7847946	0.81[AFR][1000 genomes]
rs7860283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7870166	0.84[AFR][1000 genomes]
rs7873842	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs906798	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv892629	chr9:15516375-15634326	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3407839	chr9:15530438-15665653	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv892630	chr9:15554960-15694690	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1034795	chr9:15565670-15595591	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1028357	chr9:15565670-15622556	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv982197	chr9:15579327-15590303	Weak transcription ZNF genes & repeats Enhancers Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv613652	chr9:15579744-15661859	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15553800-15592600	Weak transcription	Left Ventricle	heart
2	chr9:15554000-15590200	Weak transcription	Fetal Stomach	stomach
3	chr9:15562200-15588200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr9:15579400-15590200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:15580000-15587000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:15580000-15587600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr9:15583800-15586000	Enhancers	Thymus	Thymus
8	chr9:15584000-15585000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:15584400-15585000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr9:15584400-15585800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr9:15584400-15588600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:15584600-15585400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr9:15584600-15585400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr9:15584600-15585600	Enhancers	H9 Cell Line	embryonic stem cell
15	chr9:15584600-15585800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:15584800-15585200	Weak transcription	Fetal Thymus	thymus
17	chr9:15584800-15585600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr9:15584800-15585600	Weak transcription	Placenta	Placenta

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