Variant report

Variant	rs73411377
Chromosome Location	chr12:87903788-87903789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs58015383	1.00[AMR][1000 genomes]
rs73411343	1.00[AMR][1000 genomes]
rs73411346	1.00[AMR][1000 genomes]
rs73411350	1.00[AMR][1000 genomes]
rs73423452	1.00[AMR][1000 genomes]
rs73425323	1.00[AMR][1000 genomes]
rs73425331	1.00[AMR][1000 genomes]
rs73425341	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430525	chr12:87757132-87905532	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv559701	chr12:87801947-87905878	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87902800-87903800	Enhancers	A549	lung
2	chr12:87903000-87903800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr12:87903000-87903800	Enhancers	NHEK	skin
4	chr12:87903400-87904800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:87903400-87905200	Weak transcription	HMEC	breast
6	chr12:87903400-87907200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr12:87903400-87911600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:87903400-87911800	Weak transcription	Hela-S3	cervix
9	chr12:87903600-87904800	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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