Variant report

Variant	rs73412406
Chromosome Location	chr6:38944934-38944935
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:38944155..38947204-chr6:38949230..38952066,3	K562	blood:
2	chr6:38939906..38942695-chr6:38942827..38945177,2	K562	blood:
3	chr6:38914946..38917394-chr6:38943758..38945918,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10305417	1.00[EUR][1000 genomes]
rs10305519	1.00[EUR][1000 genomes]
rs41376545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55643263	1.00[EUR][1000 genomes]
rs55650855	1.00[EUR][1000 genomes]
rs55714548	1.00[EUR][1000 genomes]
rs56113843	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57188158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58092834	1.00[EUR][1000 genomes]
rs59648883	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60160720	1.00[EUR][1000 genomes]
rs60702678	1.00[EUR][1000 genomes]
rs61232244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73410586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73410602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412421	1.00[EUR][1000 genomes]
rs73412424	1.00[EUR][1000 genomes]
rs73412493	1.00[EUR][1000 genomes]
rs73414403	1.00[EUR][1000 genomes]
rs73424127	1.00[EUR][1000 genomes]
rs73426190	1.00[EUR][1000 genomes]
rs73428116	1.00[EUR][1000 genomes]
rs7739218	1.00[EUR][1000 genomes]
rs7756833	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv885821	chr6:38843970-39039503	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv948357	chr6:38920998-39035836	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38941400-38945000	Enhancers	Fetal Heart	heart
2	chr6:38941400-38945200	Enhancers	Fetal Intestine Small	intestine
3	chr6:38941400-38945200	Enhancers	Fetal Lung	lung
4	chr6:38941400-38945400	Enhancers	Fetal Intestine Large	intestine
5	chr6:38942200-38945000	Enhancers	Stomach Mucosa	stomach
6	chr6:38942600-38945000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:38943400-38947000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:38944200-38945400	Enhancers	Fetal Brain Male	brain
9	chr6:38944400-38945200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:38944400-38945400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:38944400-38947000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:38944800-38945000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:38944800-38945200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr6:38944800-38945200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:38944800-38945200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:38944800-38945400	Bivalent Enhancer	Colon Smooth Muscle	Colon
17	chr6:38944800-38945600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:38944800-38945800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:38944800-38946000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:38944800-38946200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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