Variant report

Variant	rs73414095
Chromosome Location	chr12:87597951-87597952
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17014350	1.00[AMR][1000 genomes]
rs17040813	1.00[AMR][1000 genomes]
rs56350179	1.00[AFR][1000 genomes]
rs60069679	1.00[AMR][1000 genomes]
rs67651962	1.00[AFR][1000 genomes]
rs73400125	1.00[AMR][1000 genomes]
rs73400158	1.00[AMR][1000 genomes]
rs73408641	1.00[AMR][1000 genomes]
rs73408682	1.00[AMR][1000 genomes]
rs73410067	1.00[AMR][1000 genomes]
rs73410102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412009	1.00[AMR][1000 genomes]
rs73412012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412014	1.00[AMR][1000 genomes]
rs73412072	1.00[AMR][1000 genomes]
rs73412073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412076	1.00[AMR][1000 genomes]
rs73412087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412099	1.00[AFR][1000 genomes]
rs73414089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73414185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73416003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73416144	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899397	chr12:86863041-87636831	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1054581	chr12:87510821-87669648	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87596800-87600000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:87597800-87603400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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