Variant report
| Variant | rs73414185 |
|---|---|
| Chromosome Location | chr12:87627184-87627185 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:87626896..87628640-chr12:87630760..87632363,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs17014350 | 1.00[AMR][1000 genomes] |
| rs17040813 | 1.00[AMR][1000 genomes] |
| rs56350179 | 1.00[AFR][1000 genomes] |
| rs60069679 | 1.00[AMR][1000 genomes] |
| rs67651962 | 1.00[AFR][1000 genomes] |
| rs73400125 | 1.00[AMR][1000 genomes] |
| rs73400158 | 1.00[AMR][1000 genomes] |
| rs73408682 | 1.00[AMR][1000 genomes] |
| rs73410067 | 1.00[AMR][1000 genomes] |
| rs73410102 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73412009 | 1.00[AMR][1000 genomes] |
| rs73412012 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73412014 | 1.00[AMR][1000 genomes] |
| rs73412072 | 1.00[AMR][1000 genomes] |
| rs73412073 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73412076 | 1.00[AMR][1000 genomes] |
| rs73412087 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73412095 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73412099 | 1.00[AFR][1000 genomes] |
| rs73414089 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73414095 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73414099 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73416003 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73416144 | 1.00[AMR][1000 genomes] |
| rs73423452 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916862 | chr12:86837694-87718558 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv899397 | chr12:86863041-87636831 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1054581 | chr12:87510821-87669648 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:87625800-87628600 | Weak transcription | HMEC | breast |
| 2 | chr12:87626400-87629200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
