Variant report

Variant	rs7341522
Chromosome Location	chr7:102579816-102579817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17135873	0.83[AFR][1000 genomes]
rs17135896	0.83[AFR][1000 genomes]
rs917332	0.83[AFR][1000 genomes]
rs917333	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv464667	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv608060	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102571600-102581800	Weak transcription	Fetal Intestine Small	intestine
2	chr7:102573800-102591400	Weak transcription	Pancreas	Pancrea
3	chr7:102574000-102592200	Weak transcription	Fetal Intestine Large	intestine
4	chr7:102574600-102594400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:102575000-102584400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr7:102575000-102586000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr7:102575000-102586800	Weak transcription	NHLF	lung
8	chr7:102575400-102587000	Strong transcription	NH-A	brain
9	chr7:102575600-102581600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:102575600-102583000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:102575600-102585200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:102575600-102586800	Weak transcription	Osteobl	bone
13	chr7:102576800-102582000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:102576800-102582400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:102576800-102582400	Weak transcription	NHDF-Ad	bronchial
16	chr7:102576800-102584000	Weak transcription	Fetal Muscle Leg	muscle
17	chr7:102576800-102584200	Weak transcription	Aorta	Aorta
18	chr7:102577000-102582400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:102577000-102582800	Weak transcription	Right Atrium	heart
20	chr7:102577200-102582400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr7:102577400-102582400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:102577600-102587400	Weak transcription	Fetal Kidney	kidney
23	chr7:102577800-102586400	Weak transcription	Fetal Brain Male	brain
24	chr7:102578400-102584000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr7:102578600-102581000	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr7:102578800-102580200	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr7:102579000-102580200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr7:102579000-102585800	Weak transcription	Fetal Muscle Trunk	muscle
29	chr7:102579400-102580000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr7:102579400-102580400	Enhancers	HUVEC	blood vessel
31	chr7:102579400-102581000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:102579400-102582200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr7:102579600-102580000	Enhancers	Colon Smooth Muscle	Colon
34	chr7:102579600-102580800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr7:102579600-102581800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr7:102579600-102582400	Weak transcription	Stomach Mucosa	stomach
37	chr7:102579600-102587200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr7:102579600-102588600	Strong transcription	HSMM	muscle
39	chr7:102579800-102580200	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr7:102579800-102580600	Weak transcription	Adipose Nuclei	Adipose
41	chr7:102579800-102581000	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr7:102579800-102581000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr7:102579800-102581200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr7:102579800-102581400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr7:102579800-102581600	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr7:102579800-102581800	Weak transcription	Fetal Stomach	stomach
47	chr7:102579800-102582000	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr7:102579800-102582200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr7:102579800-102582400	Strong transcription	Fetal Lung	lung
50	chr7:102579800-102582800	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links