Variant report

Variant	rs73415473
Chromosome Location	chr18:30615372-30615373
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs149338	1.00[ASN][1000 genomes]
rs156185	1.00[ASN][1000 genomes]
rs1693343	1.00[ASN][1000 genomes]
rs185631	1.00[ASN][1000 genomes]
rs271433	1.00[ASN][1000 genomes]
rs271442	1.00[ASN][1000 genomes]
rs271460	1.00[ASN][1000 genomes]
rs271461	1.00[ASN][1000 genomes]
rs271485	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs271501	1.00[ASN][1000 genomes]
rs271507	1.00[ASN][1000 genomes]
rs271508	1.00[ASN][1000 genomes]
rs271533	1.00[ASN][1000 genomes]
rs271534	1.00[ASN][1000 genomes]
rs271535	1.00[ASN][1000 genomes]
rs271536	1.00[ASN][1000 genomes]
rs271562	1.00[ASN][1000 genomes]
rs271563	1.00[ASN][1000 genomes]
rs271574	1.00[ASN][1000 genomes]
rs271576	1.00[ASN][1000 genomes]
rs28426669	1.00[ASN][1000 genomes]
rs28544345	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28713516	1.00[ASN][1000 genomes]
rs382574	1.00[ASN][1000 genomes]
rs4416091	1.00[ASN][1000 genomes]
rs4500823	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4572484	1.00[ASN][1000 genomes]
rs463070	1.00[ASN][1000 genomes]
rs490610	1.00[ASN][1000 genomes]
rs6507002	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6507003	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7228503	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73415474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9965081	1.00[ASN][1000 genomes]
rs9966556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9967106	1.00[ASN][1000 genomes]
rs9967219	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909527	chr18:30548902-30908581	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv833617	chr18:30555111-30693587	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1066607	chr18:30562176-30623325	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1058332	chr18:30587430-30775498	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3424771	chr18:30593003-30617800	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30614000-30616200	Enhancers	HUVEC	blood vessel
2	chr18:30614600-30615600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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