Variant report
| Variant | rs73415572 |
|---|---|
| Chromosome Location | chr18:28700649-28700650 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs11874340 | 0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11874916 | 0.82[EUR][1000 genomes] |
| rs11877259 | 0.82[EUR][1000 genomes] |
| rs16961206 | 0.82[EUR][1000 genomes] |
| rs16961253 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16961254 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16961256 | 0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16961326 | 1.00[EUR][1000 genomes] |
| rs16961328 | 1.00[EUR][1000 genomes] |
| rs16961331 | 1.00[EUR][1000 genomes] |
| rs16961333 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1816634 | 1.00[EUR][1000 genomes] |
| rs2156495 | 1.00[EUR][1000 genomes] |
| rs2156761 | 1.00[EUR][1000 genomes] |
| rs58689925 | 1.00[EUR][1000 genomes] |
| rs58911015 | 1.00[EUR][1000 genomes] |
| rs59270371 | 1.00[EUR][1000 genomes] |
| rs59683603 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6506883 | 0.82[EUR][1000 genomes] |
| rs7233226 | 1.00[EUR][1000 genomes] |
| rs7235130 | 0.82[EUR][1000 genomes] |
| rs7244822 | 0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73415516 | 0.82[EUR][1000 genomes] |
| rs73415573 | 1.00[EUR][1000 genomes] |
| rs73415585 | 1.00[EUR][1000 genomes] |
| rs73421614 | 1.00[EUR][1000 genomes] |
| rs73421636 | 1.00[EUR][1000 genomes] |
| rs73421639 | 1.00[EUR][1000 genomes] |
| rs73954506 | 0.88[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs73954515 | 0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs8086137 | 1.00[EUR][1000 genomes] |
| rs8086813 | 0.82[EUR][1000 genomes] |
| rs985861 | 1.00[EUR][1000 genomes] |
| rs985862 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530788 | chr18:28596461-28751891 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | esv3360998 | chr18:28693111-28881812 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv130642 | chr18:28696273-28701122 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:28700400-28703000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr18:28700600-28701200 | Enhancers | Stomach Mucosa | stomach |
