Variant report

Variant	rs73417229
Chromosome Location	chr11:17333776-17333777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11024246	1.00[AMR][1000 genomes]
rs73417239	1.00[AMR][1000 genomes]
rs73417246	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1836937	chr11:17291499-17339127	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv1799284	chr11:17299390-17343486	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1799280	chr11:17299390-17354775	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv1801731	chr11:17299390-17354775	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv897017	chr11:17318236-17343486	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1843677	chr11:17327038-17337413	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv553582	chr11:17327038-17337413	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv1841973	chr11:17327038-17339127	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv1851915	chr11:17327038-17343486	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17299000-17357200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:17299000-17357600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:17299000-17360600	Weak transcription	Small Intestine	intestine
4	chr11:17299200-17357000	Weak transcription	Brain Substantia Nigra	brain
5	chr11:17299400-17338200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:17299400-17355400	Weak transcription	Brain Angular Gyrus	brain
7	chr11:17299400-17357000	Weak transcription	Fetal Intestine Large	intestine
8	chr11:17299600-17335000	Weak transcription	Primary B cells from cord blood	blood
9	chr11:17300200-17335000	Weak transcription	Fetal Brain Male	brain
10	chr11:17301600-17350400	Weak transcription	Fetal Heart	heart
11	chr11:17306200-17353000	Weak transcription	Colon Smooth Muscle	Colon
12	chr11:17308200-17335800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:17308200-17353600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr11:17308200-17357600	Weak transcription	HepG2	liver
15	chr11:17308200-17360800	Strong transcription	Fetal Thymus	thymus
16	chr11:17308200-17372600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr11:17308400-17335000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:17308400-17335000	Weak transcription	NHLF	lung
19	chr11:17308400-17356800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:17308400-17361600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:17309000-17355600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr11:17309400-17335200	Weak transcription	Psoas Muscle	Psoas
23	chr11:17312200-17355400	Weak transcription	Fetal Kidney	kidney
24	chr11:17313800-17335400	Weak transcription	HSMMtube	muscle
25	chr11:17314200-17353400	Weak transcription	Stomach Mucosa	stomach
26	chr11:17314400-17335000	Strong transcription	Dnd41	blood
27	chr11:17315200-17335000	Weak transcription	Colonic Mucosa	Colon
28	chr11:17315400-17335000	Weak transcription	Spleen	Spleen
29	chr11:17315400-17353400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr11:17316000-17335200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr11:17316000-17360000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:17316000-17361000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr11:17316400-17347600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr11:17316600-17349800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:17318400-17355600	Weak transcription	Gastric	stomach
36	chr11:17318600-17350400	Weak transcription	Right Ventricle	heart
37	chr11:17318600-17353600	Weak transcription	Brain Anterior Caudate	brain
38	chr11:17318800-17334600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:17319000-17335200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:17319000-17336600	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr11:17319000-17356400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr11:17319400-17334600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:17320200-17349800	Weak transcription	Esophagus	oesophagus
44	chr11:17320600-17334600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:17320600-17349800	Weak transcription	Fetal Intestine Small	intestine
46	chr11:17320800-17372400	Weak transcription	GM12878-XiMat	blood
47	chr11:17322000-17335200	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr11:17322600-17356200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:17323000-17337000	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr11:17323000-17341000	Strong transcription	Placenta	Placenta

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