Variant report

Variant	rs73417327
Chromosome Location	chr9:15443930-15443931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16933270	0.87[AFR][1000 genomes]
rs57230095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58700335	0.87[AFR][1000 genomes]
rs58972486	0.84[AFR][1000 genomes]
rs73413278	0.87[AFR][1000 genomes]
rs73417305	0.90[AFR][1000 genomes]
rs73417318	0.87[AFR][1000 genomes]
rs73417320	0.87[AFR][1000 genomes]
rs7858930	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517975	chr9:15286446-15534070	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1030287	chr9:15332709-15458001	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv831520	chr9:15404866-15444447	Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
7	nsv892628	chr9:15420805-15528290	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15426400-15468200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:15431400-15445800	Weak transcription	Right Ventricle	heart
3	chr9:15431400-15446000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr9:15431400-15447800	Weak transcription	Psoas Muscle	Psoas
5	chr9:15433400-15492400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:15434000-15464000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:15435000-15444400	Weak transcription	Brain Substantia Nigra	brain
8	chr9:15438000-15446400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:15438400-15447800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr9:15438400-15469800	Strong transcription	Primary B cells from peripheral blood	blood
11	chr9:15438600-15444200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr9:15438800-15468800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:15439000-15492200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr9:15439400-15447600	Weak transcription	Small Intestine	intestine
15	chr9:15440600-15444200	Weak transcription	Fetal Kidney	kidney
16	chr9:15441600-15449400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr9:15441800-15444000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr9:15441800-15449000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:15441800-15449800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:15441800-15449800	Strong transcription	Lung	lung
21	chr9:15441800-15457000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:15442000-15449400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:15442000-15458600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr9:15442000-15463000	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr9:15442200-15469400	Strong transcription	Duodenum Mucosa	Duodenum
26	chr9:15442400-15444200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr9:15442400-15444600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
28	chr9:15442400-15449800	Strong transcription	Fetal Stomach	stomach
29	chr9:15442400-15451800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr9:15442400-15464400	Strong transcription	Fetal Muscle Trunk	muscle
31	chr9:15442600-15448600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
32	chr9:15442600-15455200	Strong transcription	Muscle Satellite Cultured Cells	--
33	chr9:15442600-15455200	Strong transcription	Dnd41	blood
34	chr9:15442600-15478200	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr9:15442600-15478600	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr9:15442800-15448200	Strong transcription	Spleen	Spleen
37	chr9:15442800-15450200	Strong transcription	Brain Angular Gyrus	brain
38	chr9:15442800-15451000	Strong transcription	Thymus	Thymus
39	chr9:15442800-15453400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr9:15442800-15456200	Strong transcription	Fetal Muscle Leg	muscle
41	chr9:15442800-15508400	Strong transcription	Fetal Thymus	thymus
42	chr9:15443000-15444000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
43	chr9:15443000-15444800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:15443000-15446000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr9:15443000-15455400	Strong transcription	Adipose Nuclei	Adipose
46	chr9:15443000-15457000	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr9:15443000-15462400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr9:15443000-15463800	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr9:15443000-15470200	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr9:15443000-15478000	Strong transcription	Monocytes-CD14+_RO01746	blood

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