Variant report

Variant	rs73417349
Chromosome Location	chr9:15462041-15462042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:15452841..15455105-chr9:15460969..15462549,2	MCF-7	breast:
2	chr9:15460438..15462914-chr9:15467328..15469967,2	K562	blood:
3	chr9:15454833..15458437-chr9:15459733..15463748,4	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57846241	1.00[AMR][1000 genomes]
rs57996142	1.00[AMR][1000 genomes]
rs58747763	1.00[AMR][1000 genomes]
rs59521848	1.00[AMR][1000 genomes]
rs73410288	1.00[AMR][1000 genomes]
rs73413235	1.00[AMR][1000 genomes]
rs73423313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73423324	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517975	chr9:15286446-15534070	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv892628	chr9:15420805-15528290	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15426400-15468200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:15433400-15492400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:15434000-15464000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:15438400-15469800	Strong transcription	Primary B cells from peripheral blood	blood
5	chr9:15438800-15468800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:15439000-15492200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr9:15442000-15463000	Strong transcription	Sigmoid Colon	Sigmoid Colon
8	chr9:15442200-15469400	Strong transcription	Duodenum Mucosa	Duodenum
9	chr9:15442400-15464400	Strong transcription	Fetal Muscle Trunk	muscle
10	chr9:15442600-15478200	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr9:15442600-15478600	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr9:15442800-15508400	Strong transcription	Fetal Thymus	thymus
13	chr9:15443000-15462400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:15443000-15463800	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr9:15443000-15470200	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr9:15443000-15478000	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr9:15443000-15482200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr9:15443200-15465600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr9:15443200-15469200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:15443200-15478000	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr9:15443200-15479600	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr9:15443200-15490400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr9:15443200-15492400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:15443400-15466400	Strong transcription	HSMM	muscle
25	chr9:15443400-15467400	Strong transcription	Fetal Brain Female	brain
26	chr9:15443400-15469000	Strong transcription	Osteobl	bone
27	chr9:15443400-15469600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:15443400-15469600	Strong transcription	Fetal Intestine Large	intestine
29	chr9:15443400-15479200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr9:15443600-15469000	Strong transcription	Liver	Liver
31	chr9:15443600-15470400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:15443800-15492200	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr9:15444000-15462800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr9:15444000-15467400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr9:15444000-15482000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:15444000-15487600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr9:15444000-15492400	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr9:15444400-15495200	Weak transcription	Fetal Heart	heart
39	chr9:15444600-15491200	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr9:15444800-15482200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr9:15445400-15468600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr9:15446800-15468200	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr9:15447000-15509800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr9:15447400-15469800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr9:15448200-15466000	Weak transcription	Gastric	stomach
46	chr9:15448200-15472200	Weak transcription	Aorta	Aorta
47	chr9:15448200-15482200	Weak transcription	Psoas Muscle	Psoas
48	chr9:15448400-15480000	Weak transcription	Stomach Mucosa	stomach
49	chr9:15448600-15476400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr9:15449000-15492200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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