Variant report

Variant	rs73417661
Chromosome Location	chr7:104483516-104483517
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs56007018	1.00[AMR][1000 genomes]
rs56397729	1.00[AMR][1000 genomes]
rs57437921	1.00[AMR][1000 genomes]
rs57834400	1.00[AMR][1000 genomes]
rs58052615	1.00[AMR][1000 genomes]
rs58436549	1.00[AMR][1000 genomes]
rs58652912	1.00[AMR][1000 genomes]
rs58727441	1.00[AMR][1000 genomes]
rs59672048	1.00[AMR][1000 genomes]
rs59965211	1.00[AMR][1000 genomes]
rs60649764	1.00[AMR][1000 genomes]
rs60711291	1.00[AMR][1000 genomes]
rs60977282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417640	1.00[AMR][1000 genomes]
rs73417643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417662	1.00[AMR][1000 genomes]
rs73417667	1.00[AMR][1000 genomes]
rs73417669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73419733	1.00[AMR][1000 genomes]
rs73419738	1.00[AMR][1000 genomes]
rs73419746	1.00[AMR][1000 genomes]
rs73419748	1.00[AMR][1000 genomes]
rs73419776	1.00[AMR][1000 genomes]
rs73419784	1.00[AMR][1000 genomes]
rs73419799	1.00[AMR][1000 genomes]
rs73419801	1.00[AMR][1000 genomes]
rs73421715	1.00[AMR][1000 genomes]
rs73421732	1.00[AMR][1000 genomes]
rs73421755	1.00[AMR][1000 genomes]
rs73421758	1.00[AMR][1000 genomes]
rs73714148	1.00[AMR][1000 genomes]
rs73714170	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429790	chr7:104314049-104488049	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv429792	chr7:104400049-104488049	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5887	chr7:104401250-104491604	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv522743	chr7:104411273-104486707	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104466000-104486800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:104476400-104503000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:104479600-104488800	Weak transcription	Colon Smooth Muscle	Colon
4	chr7:104481600-104514400	Weak transcription	Fetal Kidney	kidney
5	chr7:104482400-104483600	Weak transcription	Fetal Intestine Large	intestine
6	chr7:104482400-104484800	Strong transcription	Fetal Intestine Small	intestine
7	chr7:104482600-104486000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:104482600-104486000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:104482800-104483600	Enhancers	Brain Anterior Caudate	brain
10	chr7:104483000-104486000	Weak transcription	Brain Hippocampus Middle	brain
11	chr7:104483400-104483600	Enhancers	Pancreas	Pancrea

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