Variant report

Variant	rs73418178
Chromosome Location	chr15:56250167-56250168
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:56249710..56252114-chr15:56284678..56286584,2	MCF-7	breast:
2	chr15:56250089..56252612-chr15:56259045..56261387,2	MCF-7	breast:
3	chr15:56249277..56251562-chr15:56285197..56286697,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000069869	Chromatin interaction

Extended variants
information (count: 198 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:194)

rs_ID	r²[population]
rs10459621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10518824	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10518828	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10518830	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10518831	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11071233	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12437795	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12437882	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12438374	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12438400	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12438439	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12438522	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12439407	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12439762	0.83[EUR][1000 genomes]
rs12440230	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12440431	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12440476	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12441416	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12441606	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12441774	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12441843	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12441869	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12442940	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12442946	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12442990	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12442991	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12591159	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12591179	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12591210	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12591215	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12591218	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12591227	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12591621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12591733	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12592018	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12592220	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12593387	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12593593	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12594420	0.81[AMR][1000 genomes]
rs12594913	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1553739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16976618	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16976626	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16976635	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16976638	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16976644	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16976646	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16976648	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16976652	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16976654	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1973571	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2271288	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34136305	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35329525	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35617453	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4492984	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4609780	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4774838	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55726785	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55747940	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55765028	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55924913	0.84[AFR][1000 genomes]
rs55926597	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55959977	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55990153	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56109567	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56112958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56220861	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56327716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56380782	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56796048	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56864283	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56890666	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56914055	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs57195161	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs57208793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57273249	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57365614	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57465039	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57472279	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58300472	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58703788	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58855534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58879329	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59733635	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs60201187	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs60414633	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60755985	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60760787	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61055309	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61192820	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61261303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61423234	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61444949	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61558945	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62043794	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62043803	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62043804	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62043805	0.83[EUR][1000 genomes]
rs62043806	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62043807	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62043808	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62043814	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62043851	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62043853	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66463411	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66493820	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66503769	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66515818	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66520610	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66530465	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66540128	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66571152	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66663065	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66700079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66735896	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66846453	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67121306	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67144308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67192017	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67229420	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67240909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67242621	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67312536	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67313474	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67387007	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs67480957	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67497103	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs67519209	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67522850	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67585628	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67620259	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67777171	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67790265	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67850372	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67927048	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67944364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67955420	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67958775	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67974830	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs68033152	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68052665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68111860	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68170026	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7165958	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7170158	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7170900	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7171251	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7172268	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7172569	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7172931	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7173801	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7174503	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7174868	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7175317	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7177177	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7178179	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7179719	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7180734	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7181148	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7181534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72732270	0.82[EUR][1000 genomes]
rs72732290	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72732302	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72734315	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72734319	0.88[ASN][1000 genomes]
rs72734323	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72734327	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72734329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72734338	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72734341	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72734345	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72734352	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72734353	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72734354	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72734359	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72734361	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72734363	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72734364	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72734368	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72734370	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72734374	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72734384	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72734385	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72734386	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72734389	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72734390	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72734391	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7497861	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7497904	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7498073	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs925257	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs952533	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9744758	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904245	chr15:56229760-56324451	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56229400-56259000	Weak transcription	Ovary	ovary
2	chr15:56229400-56259400	Weak transcription	Small Intestine	intestine
3	chr15:56229600-56251600	Weak transcription	K562	blood
4	chr15:56229600-56282600	Weak transcription	NHLF	lung
5	chr15:56229800-56259000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:56231400-56284200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr15:56231600-56260000	Weak transcription	Left Ventricle	heart
8	chr15:56232200-56251600	Weak transcription	HSMMtube	muscle
9	chr15:56232600-56257200	Weak transcription	Primary T cells from cord blood	blood
10	chr15:56235800-56253600	Weak transcription	Fetal Lung	lung
11	chr15:56236000-56258200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:56236000-56259000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr15:56236000-56261200	Weak transcription	Esophagus	oesophagus
14	chr15:56236200-56257000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:56236200-56257000	Weak transcription	Aorta	Aorta
16	chr15:56236200-56276000	Weak transcription	HUVEC	blood vessel
17	chr15:56236600-56257000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr15:56236800-56251600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:56236800-56257000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr15:56236800-56282800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:56237000-56251800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:56238200-56257000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr15:56241000-56261400	Weak transcription	Pancreas	Pancrea
24	chr15:56242800-56255600	Weak transcription	Hela-S3	cervix
25	chr15:56243000-56257000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr15:56243200-56250400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:56243200-56251400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:56243200-56253200	Weak transcription	NHEK	skin
29	chr15:56243200-56253400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:56243200-56255600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr15:56243200-56256400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr15:56243200-56256400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr15:56243200-56276200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:56243400-56253000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:56243400-56253000	Weak transcription	HMEC	breast
36	chr15:56243400-56253200	Weak transcription	HSMM	muscle
37	chr15:56243400-56257000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr15:56244600-56257800	Weak transcription	Fetal Brain Male	brain
39	chr15:56247400-56253000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr15:56247400-56257000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:56247600-56251200	Weak transcription	Fetal Intestine Large	intestine
42	chr15:56247600-56251800	Weak transcription	Duodenum Mucosa	Duodenum
43	chr15:56247600-56252000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:56247600-56253000	Weak transcription	Gastric	stomach
45	chr15:56247600-56257400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:56247800-56254800	Weak transcription	Fetal Intestine Small	intestine
47	chr15:56248000-56250600	Weak transcription	A549	lung
48	chr15:56248200-56285200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr15:56248800-56251200	Weak transcription	HepG2	liver
50	chr15:56250000-56266600	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links