Variant report

Variant	rs73422379
Chromosome Location	chr15:58584602-58584603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58583697..58586466-chr15:58588666..58590311,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10162816	1.00[EUR][1000 genomes]
rs10467930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10468015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12592621	1.00[AMR][1000 genomes]
rs16939944	1.00[AMR][1000 genomes]
rs174419	1.00[EUR][1000 genomes]
rs182005	1.00[EUR][1000 genomes]
rs1844185	1.00[EUR][1000 genomes]
rs261305	1.00[EUR][1000 genomes]
rs261321	1.00[EUR][1000 genomes]
rs261323	1.00[EUR][1000 genomes]
rs261325	1.00[EUR][1000 genomes]
rs28578060	1.00[EUR][1000 genomes]
rs28705763	1.00[EUR][1000 genomes]
rs394492	1.00[EUR][1000 genomes]
rs396804	1.00[EUR][1000 genomes]
rs403821	1.00[EUR][1000 genomes]
rs412971	1.00[EUR][1000 genomes]
rs444258	1.00[EUR][1000 genomes]
rs483243	1.00[EUR][1000 genomes]
rs566160	1.00[EUR][1000 genomes]
rs57003724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57433075	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57566316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59086954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59098465	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59983186	1.00[AMR][1000 genomes]
rs73410579	1.00[AMR][1000 genomes]
rs73414437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73414442	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73416408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73416411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73416428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73420505	1.00[AMR][1000 genomes]
rs73422356	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73422365	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73422376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73422388	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73422390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73424228	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73426183	1.00[AMR][1000 genomes]
rs73428103	1.00[AMR][1000 genomes]
rs73428118	1.00[AMR][1000 genomes]
rs8024099	1.00[EUR][1000 genomes]
rs8034034	1.00[EUR][1000 genomes]
rs8040955	1.00[EUR][1000 genomes]
rs920914	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv904264	chr15:58505122-58588510	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv904265	chr15:58517528-58588510	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv904266	chr15:58580921-58689187	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58579800-58586200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:58582400-58586200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:58583000-58590200	Weak transcription	Thymus	Thymus
4	chr15:58584400-58585400	ZNF genes & repeats	GM12878-XiMat	blood
5	chr15:58584600-58585200	ZNF genes & repeats	Liver	Liver

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