Variant report

Variant	rs73424127
Chromosome Location	chr6:38803008-38803009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs41376545	1.00[EUR][1000 genomes]
rs55643263	1.00[EUR][1000 genomes]
rs55714548	1.00[EUR][1000 genomes]
rs56113843	1.00[EUR][1000 genomes]
rs57188158	1.00[EUR][1000 genomes]
rs58092834	1.00[EUR][1000 genomes]
rs59648883	1.00[EUR][1000 genomes]
rs60702678	1.00[EUR][1000 genomes]
rs61232244	1.00[EUR][1000 genomes]
rs73410586	1.00[EUR][1000 genomes]
rs73410602	1.00[EUR][1000 genomes]
rs73412406	1.00[EUR][1000 genomes]
rs73412421	1.00[EUR][1000 genomes]
rs73412424	1.00[EUR][1000 genomes]
rs73412493	1.00[EUR][1000 genomes]
rs73420221	1.00[AMR][1000 genomes]
rs73426190	1.00[EUR][1000 genomes]
rs73428116	1.00[EUR][1000 genomes]
rs7756833	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv830643	chr6:38726675-38905589	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38766800-38824400	Weak transcription	K562	blood
2	chr6:38796400-38811600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:38801000-38804600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:38802800-38803400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:38802800-38803600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:38803000-38803600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:38803000-38805200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:38803000-38805200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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