Variant report

Variant	rs73424475
Chromosome Location	chr11:18657355-18657356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:18415166..18418061-chr11:18653248..18658001,5	K562	blood:
2	chr11:18608840..18612225-chr11:18653403..18657833,8	MCF-7	breast:
3	chr11:18546581..18551368-chr11:18654825..18657467,6	K562	blood:
4	chr11:18546372..18549758-chr11:18653531..18658575,7	K562	blood:
5	chr11:18609259..18612621-chr11:18654534..18657923,6	MCF-7	breast:
6	chr11:18655737..18658361-chr11:18720798..18722992,3	MCF-7	breast:
7	chr11:18415280..18417349-chr11:18656133..18657834,2	MCF-7	breast:
8	chr11:18654961..18657619-chr8:56985621..56988332,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM86A-4	chr11:18657172-18657809	NONHSAT018310

No data

Variant related genes	Relation type
ENSG00000151116	Chromatin interaction
ENSG00000134333	Chromatin interaction
ENSG00000253603	Chromatin interaction
ENSG00000151117	Chromatin interaction
ENSG00000074319	Chromatin interaction
ENSG00000238650	Chromatin interaction
ENSG00000008988	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12790143	0.83[ASN][1000 genomes]
rs16935609	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121385	0.83[ASN][1000 genomes]
rs2658558	0.83[ASN][1000 genomes]
rs34242612	0.83[ASN][1000 genomes]
rs56811637	0.83[ASN][1000 genomes]
rs58804032	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58988307	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60928664	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61208217	0.83[ASN][1000 genomes]
rs61424905	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61752314	0.83[ASN][1000 genomes]
rs7106180	0.83[ASN][1000 genomes]
rs7110470	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71486878	1.00[AMR][1000 genomes]
rs73422545	0.83[ASN][1000 genomes]
rs73422599	0.83[ASN][1000 genomes]
rs73422601	0.83[ASN][1000 genomes]
rs73424410	0.83[ASN][1000 genomes]
rs73424413	0.83[ASN][1000 genomes]
rs73424436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73424437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73424439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73424445	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73424447	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73424452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73424463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73424468	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73424485	1.00[AFR][1000 genomes]
rs73424497	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7926511	0.83[ASN][1000 genomes]
rs7936497	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936520	0.81[EUR][1000 genomes]
rs7938645	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942526	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951729	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872872	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872873	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv1042155	chr11:18435855-18697576	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
4	nsv1046886	chr11:18547568-18781448	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
5	nsv540956	chr11:18547568-18781448	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18654400-18657400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr11:18656800-18657800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:18657000-18657600	Enhancers	HepG2	liver

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