Variant report

Variant	rs73425041
Chromosome Location	chr11:17460363-17460364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11024293	0.85[AFR][1000 genomes]
rs58661240	1.00[AFR][1000 genomes]
rs59392822	1.00[AFR][1000 genomes]
rs60824529	0.96[AFR][1000 genomes]
rs73425073	1.00[AFR][1000 genomes]
rs73425085	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17435200-17460600	Weak transcription	Right Atrium	heart
2	chr11:17443800-17462600	Weak transcription	Brain Substantia Nigra	brain
3	chr11:17446400-17460600	Weak transcription	Fetal Intestine Small	intestine
4	chr11:17454000-17464000	Weak transcription	Brain Anterior Caudate	brain
5	chr11:17454200-17465800	Weak transcription	Brain Angular Gyrus	brain
6	chr11:17456000-17469200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:17456200-17461000	Weak transcription	Spleen	Spleen
8	chr11:17456600-17460400	Weak transcription	Fetal Lung	lung
9	chr11:17457000-17467200	Weak transcription	Fetal Brain Male	brain
10	chr11:17457200-17465400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:17457400-17464600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:17457800-17460400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:17458800-17462000	Enhancers	Fetal Thymus	thymus
14	chr11:17459600-17460600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr11:17460000-17460800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:17460000-17461400	Enhancers	Dnd41	blood
17	chr11:17460000-17461600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:17460200-17461200	Enhancers	Gastric	stomach
19	chr11:17460200-17462400	Strong transcription	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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