Variant report

Variant	rs73426183
Chromosome Location	chr15:58462023-58462024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58461476..58463805-chr15:58468406..58470594,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10467930	1.00[AMR][1000 genomes]
rs10468015	1.00[AMR][1000 genomes]
rs12592621	1.00[AMR][1000 genomes]
rs16939944	1.00[AMR][1000 genomes]
rs57003724	1.00[AMR][1000 genomes]
rs57433075	1.00[AMR][1000 genomes]
rs57566316	1.00[AMR][1000 genomes]
rs59086954	1.00[AMR][1000 genomes]
rs59098465	1.00[AMR][1000 genomes]
rs59983186	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410579	1.00[AMR][1000 genomes]
rs73414437	1.00[AMR][1000 genomes]
rs73414442	1.00[AMR][1000 genomes]
rs73416408	1.00[AMR][1000 genomes]
rs73416411	1.00[AMR][1000 genomes]
rs73416428	1.00[AMR][1000 genomes]
rs73422356	1.00[AMR][1000 genomes]
rs73422365	1.00[AMR][1000 genomes]
rs73422376	1.00[AMR][1000 genomes]
rs73422379	1.00[AMR][1000 genomes]
rs73422388	1.00[AMR][1000 genomes]
rs73422390	1.00[AMR][1000 genomes]
rs73424228	1.00[AMR][1000 genomes]
rs73426165	0.93[AFR][1000 genomes]
rs73426179	0.97[AFR][1000 genomes]
rs73428103	1.00[AMR][1000 genomes]
rs73428118	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2752813	chr15:58461006-58507064	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58441000-58463800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:58451200-58481000	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr15:58454800-58471400	Weak transcription	Spleen	Spleen
4	chr15:58458400-58463400	Weak transcription	Fetal Muscle Leg	muscle
5	chr15:58458400-58477800	Strong transcription	Liver	Liver
6	chr15:58461400-58462400	Enhancers	K562	blood
7	chr15:58461800-58464000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr15:58461800-58473000	Weak transcription	Pancreas	Pancrea

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