Variant report

Variant	rs73439253
Chromosome Location	chr6:64389639-64389640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs34196474	1.00[AMR][1000 genomes]
rs59091181	1.00[AMR][1000 genomes]
rs73439221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73441048	1.00[AMR][1000 genomes]
rs73449618	1.00[AMR][1000 genomes]
rs73449632	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451349	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022376	chr6:64386826-64445195	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64347000-64422400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:64351200-64405000	Weak transcription	Thymus	Thymus
3	chr6:64354000-64421200	Weak transcription	Gastric	stomach
4	chr6:64357800-64393400	Weak transcription	Placenta	Placenta
5	chr6:64365800-64409400	Weak transcription	Fetal Stomach	stomach
6	chr6:64370800-64395000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:64370800-64413400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:64371000-64394200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:64371000-64409000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:64373800-64394200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:64373800-64394600	Weak transcription	HSMMtube	muscle
12	chr6:64373800-64394800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:64374000-64391600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:64374200-64393400	Weak transcription	HSMM	muscle
15	chr6:64374200-64394000	Weak transcription	NH-A	brain
16	chr6:64374200-64394200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:64374200-64405800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:64374200-64414600	Weak transcription	HMEC	breast
19	chr6:64375600-64409000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr6:64377000-64394000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:64381200-64394200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:64381400-64405200	Weak transcription	Brain Germinal Matrix	brain
23	chr6:64381600-64389800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:64383200-64390000	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:64383400-64390200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr6:64383400-64394000	Weak transcription	Fetal Muscle Leg	muscle
27	chr6:64383800-64394000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr6:64384600-64394000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:64384600-64414400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr6:64385000-64394000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr6:64386400-64389800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:64386600-64394000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:64386800-64394000	Weak transcription	Left Ventricle	heart
34	chr6:64386800-64394000	Weak transcription	HUVEC	blood vessel
35	chr6:64386800-64397000	Weak transcription	Pancreas	Pancrea
36	chr6:64387000-64391800	Weak transcription	Colon Smooth Muscle	Colon
37	chr6:64387000-64394200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:64387200-64410200	Weak transcription	Colonic Mucosa	Colon
39	chr6:64387200-64421000	Weak transcription	Aorta	Aorta
40	chr6:64387400-64390000	Weak transcription	Fetal Intestine Large	intestine
41	chr6:64387400-64390000	Weak transcription	Fetal Kidney	kidney
42	chr6:64387400-64390600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr6:64387400-64391800	Weak transcription	Psoas Muscle	Psoas
44	chr6:64387400-64393400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:64387400-64394000	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr6:64387400-64394000	Weak transcription	Ovary	ovary
47	chr6:64387400-64394000	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr6:64387400-64394000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr6:64387400-64394200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr6:64387400-64394200	Weak transcription	Brain Angular Gyrus	brain

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