Variant report
| Variant | rs73442195 |
|---|---|
| Chromosome Location | chr6:55801893-55801894 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:55313181..55315342-chr6:55800874..55802800,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11965332 | 1.00[EUR][1000 genomes] |
| rs35338969 | 1.00[EUR][1000 genomes] |
| rs57942055 | 1.00[EUR][1000 genomes] |
| rs59302865 | 1.00[EUR][1000 genomes] |
| rs6459121 | 1.00[EUR][1000 genomes] |
| rs6902463 | 1.00[EUR][1000 genomes] |
| rs6922937 | 1.00[EUR][1000 genomes] |
| rs6925547 | 1.00[EUR][1000 genomes] |
| rs6938871 | 1.00[EUR][1000 genomes] |
| rs73444263 | 1.00[EUR][1000 genomes] |
| rs73444285 | 1.00[EUR][1000 genomes] |
| rs73446214 | 1.00[EUR][1000 genomes] |
| rs73455141 | 1.00[EUR][1000 genomes] |
| rs73457035 | 1.00[EUR][1000 genomes] |
| rs7453182 | 1.00[EUR][1000 genomes] |
| rs9464312 | 1.00[EUR][1000 genomes] |
| rs9464313 | 1.00[EUR][1000 genomes] |
| rs9464314 | 1.00[EUR][1000 genomes] |
| rs9475483 | 1.00[EUR][1000 genomes] |
| rs9475484 | 1.00[EUR][1000 genomes] |
| rs9475485 | 1.00[EUR][1000 genomes] |
| rs9885849 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1034037 | chr6:55222409-56069600 | Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1024174 | chr6:55713889-55829936 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1029301 | chr6:55713889-55834480 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv830665 | chr6:55755560-55920219 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv5312 | chr6:55784991-55830051 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv885911 | chr6:55789704-56143231 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:55801800-55802600 | Enhancers | Primary monocytes fromperipheralblood | blood |
| 2 | chr6:55801800-55802600 | Enhancers | Monocytes-CD14+_RO01746 | blood |
